CN181600

Overview
NameCN181600
Unique NameCN181600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1007 contig Csv1_Contig1007:453..1211. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN181600 vs. ExPASy Swiss-Prot
Match: TIF3B_ARATH (Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.169e-18
Identity = 49/87 (56.32%), Postives = 62/87 (71.26%), Query Frame = -3 
Query:  479 MKTDNPNC--PASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPYPVQSEAKASD 733
            M+T N     P SSP L R+PS  ST++ +ASP AQ +P+Q    C+  A+LP+ARRHSLQRF EKRRDRLV+KNPYP  S+ K +D
Sbjct:   88 METKNSTSISPVSSPALNRAPSFSSTSN-VASPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRDRLVNKNPYPT-SDFKKTD 172
The following BLAST results are available for this feature:
BLAST of CN181600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TIF3B_ARATH8.169e-1856.32Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D04_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181600 ID=CN181600; Name=CN181600; organism=Citrus sinensis; type=EST; length=759bp
CCTTTTTTAGATACAATAGGTTTGTCATTTATTAGGCAGTTCTGATACAC
AAGATATCAATACAACAATTAGACGCACAGTTTGAACAGACATTTCAATT
GTCTTTGGATGTGAGAAGCAAAAATGTGAACTAATTCTCTATTGCCAATT
AAAAGATGCAATCACAGGGCGAAAGCACCTACATCAAGAAATTTTTCTTT
TCTTTTGGTCCCTGACAATGAGAAGTTGTACACACGCCATTCCTACAAAT
TCCAAAAGCAATTCAAACATCATCACACCCTGTGCGCTTGGGTTTTTCAC
ACAAACAATACAGCAATGTCTAGTTTATCTAAGTAGATAGTTCTGGATTA
TTTACTACAAACATCTAAGCAAGATAGATAATTTATGCAACATTGGCTGC
AGCCTTAGGTTGCAATTCTTCCTGAGGCACGGAAGTTTTCTCAAAGCAAC
CTGCCTCTGCAGGAGTCTGAGCTTTGGTGTCAGAAGCTTTTGCCTCTGAT
TGAACAGGATATGGATTCTTGCTCACCAGCCTGTCACGTCGCTTCTCGAA
AAATCGCTGAAGGGAATGCCTCCTTGCCATTGGTAGTTCAGCTTGCAATT
TACAGAGGAGATTCCTTTGAACAGGATATGATTGTGCCCGAGGTGATGCC
AAAGCACTTGCAGTGCTTTGCAGTGAAGGAGACCTTGTTAGAACTGGTGA
AGAGGCAGGACAGTTGGGATTGTCCGTCTTCATGTCACTTGTGTTAGTAA
CAGTGGCAG
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