CN188635

Overview
NameCN188635
Unique NameCN188635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188635 vs. ExPASy Swiss-Prot
Match: IF4E3_ARATH (Eukaryotic translation initiation factor 4E type 3 OS=Arabidopsis thaliana GN=At5g18110 PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 9.922e-88
Identity = 151/169 (89.35%), Postives = 158/169 (93.49%), Query Frame = -3
Query:  258 TRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPHDASLRDNSSYRNTWLRG 764
            TRRTPGVR Q SYEDNIKK+V+FSTVEGFW CYCHLAR SLLPSPTDLH FK+GIRPLWED ANCNGGKWIIRF KVVS RFWEDL+LALVGDQLD  DNICGAVLS+RFNEDI+SVWNRNASDHQAVM LRDSIKRHLKLPH+YVMEYKPHDASLRDNSSYRNTWLRG
Sbjct:   54 TRRTPGVRNQ-SYEDNIKKMVEFSTVEGFWACYCHLARSSLLPSPTDLHFFKDGIRPLWEDGANCNGGKWIIRFSKVVSARFWEDLLLALVGDQLDDADNICGAVLSVRFNEDIISVWNRNASDHQAVMGLRDSIKRHLKLPHAYVMEYKPHDASLRDNSSYRNTWLRG 221          
BLAST of CN188635 vs. ExPASy Swiss-Prot
Match: IF4E2_MOUSE (Eukaryotic translation initiation factor 4E type 2 OS=Mus musculus GN=Eif4e2 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.395e-46
Identity = 84/158 (53.16%), Postives = 115/158 (72.78%), Query Frame = -3
Query:  294 TRRTPGVRTQT-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPHDASLR 764
            +RRTPG  T + SYE NIK+I  F++VE FW  Y H+ RP  L   +D HLFKEGI+P+WED AN NGGKWIIR +K ++ R WE+L+LA++G+Q   G+ ICGAV+S+RF EDI+S+WN+ ASD      +RD+++R L LP + +MEYK H  S++
Sbjct:   65 SRRTPGRPTSSQSYEQNIKQIGTFASVEQFWKFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSIK 222          
BLAST of CN188635 vs. ExPASy Swiss-Prot
Match: IF4E2_HUMAN (Eukaryotic translation initiation factor 4E type 2 OS=Homo sapiens GN=EIF4E2 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.227e-45
Identity = 84/158 (53.16%), Postives = 115/158 (72.78%), Query Frame = -3
Query:  294 TRRTPGVRTQT-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPHDASLR 764
            +RRTPG  T + SYE NIK+I  F++VE FW  Y H+ RP  L   +D HLFKEGI+P+WED AN NGGKWIIR +K ++ R WE+L+LA++G+Q   G+ ICGAV+S+RF EDI+S+WN+ ASD      +RD+++R L LP + +MEYK H  S++
Sbjct:   65 SRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSIK 222          
BLAST of CN188635 vs. ExPASy Swiss-Prot
Match: IF4E4_CAEEL (Eukaryotic translation initiation factor 4E-4 OS=Caenorhabditis elegans GN=ife-4 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.552e-40
Identity = 76/163 (46.63%), Postives = 105/163 (64.42%), Query Frame = -3
Query:  270 RTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPHDASLRDNSSYRNT 758
            R  G      Y   ++ +    +VE FW    H  RP+ +    D+H FK G++P+WED ANC GGKWIIR KK +S R WE+L++A++G+Q   GD +CGAV SIR  EDI+S+WNRNA D      +R++++  L+LP + V+EYK HD  LRD SSYR+T
Sbjct:   44 RPTGKFDPEDYASYVQPVGIMKSVEQFWSIMVHFKRPTEMCDKADIHFFKTGVKPVWEDPANCKGGKWIIRLKKGLSTRIWENLLMAIIGEQFLVGDELCGAVCSIRNQEDIISLWNRNADDTPVTNRIRETLRSVLQLPQNTVLEYKRHDDCLRDQSSYRHT 206          
BLAST of CN188635 vs. ExPASy Swiss-Prot
Match: IF4E3_CAEEL (Eukaryotic translation initiation factor 4E-3 OS=Caenorhabditis elegans GN=ife-3 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.406e-25
Identity = 58/157 (36.94%), Postives = 96/157 (61.15%), Query Frame = -3
Query:  276 YEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKK----VVSGRFWEDLVLALVGDQLD-YGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPH-DASLRDNSSYR 728
            +ED +K +  F TVE FW  Y H+     L   +D +LFKEGI+P+WED  N  GG+W++   K     +   +W +L++A+VG+Q D YGD ICGAV+++R   D +S+W R+A+     + +   +K+ L +P + ++ Y+ H D+S R +S+ +
Sbjct:   51 WEDCLKMVSLFDTVEDFWSLYNHIQSAGGLNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQRRTQLLDHYWLELLMAIVGEQFDEYGDYICGAVVNVRQKGDKVSLWTRDATRDDVNLRIGQVLKQKLSIPDTEILRYEVHKDSSARTSSTVK 207          
BLAST of CN188635 vs. ExPASy Swiss-Prot
Match: IF4E_DROME (Eukaryotic translation initiation factor 4E OS=Drosophila melanogaster GN=eIF-4E PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.142e-25
Identity = 54/159 (33.96%), Postives = 94/159 (59.12%), Query Frame = -3
Query:  267 SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWII---RFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPH-DASLRDNSSYRNTW 731
            S+ED   +I  F TVE FW  Y H+  PS +   +D  LFK+ IRP+WED+AN  GG+W+I   +  K      W D++L L+G+  D+ D ICGAV++IR   + +S+W  + ++ +A + +   ++  L+L  +  ++Y+ H D  ++  S+ ++ +
Sbjct:   99 SWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSIY 257          
BLAST of CN188635 vs. ExPASy Swiss-Prot
Match: IF4E1_ARATH (Eukaryotic translation initiation factor 4E-1 OS=Arabidopsis thaliana GN=EIF4E1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.142e-25
Identity = 57/141 (40.43%), Postives = 85/141 (60.28%), Query Frame = -3
Query:  333 PGVRT-QTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHS 752
            P V++ QTS+  +++ +  FSTVE FW  Y ++  PS L    D + FK  I P WED    NGGKW + F K  S + W   +LAL+G+Q D+GD ICGAV++IR  ++ +S+W +NAS+  A +++    K  L   +S
Sbjct:   73 PAVKSKQTSWGSSLRPVFTFSTVEEFWSLYNNMKHPSKLAHGADFYCFKHIIEPKWEDPICANGGKWTMTFPKEKSDKSWLYTLLALIGEQFDHGDEICGAVVNIRGKQERISIWTKNASNEAAQVSIGKQWKEFLDYNNS 213          
BLAST of CN188635 vs. ExPASy Swiss-Prot
Match: IF4E_BOVIN (Eukaryotic translation initiation factor 4E OS=Bos taurus GN=EIF4E PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.660e-24
Identity = 57/162 (35.19%), Postives = 89/162 (54.94%), Query Frame = -3
Query:  264 SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVS----GRFWEDLVLALVGDQL-DYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPH-DASLRDNSSYRNTWL 731
            +++ N++ I  F TVE FW  Y H+   S L    D  LFK+GI P+WED  N  GG+W+I   K        RFW + VL L+G+   DY D++CGAV+++R   D +++W     + +AV  +    K  L LP   V+ Y+ H D + +  S+ +N ++
Sbjct:   55 TWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETVLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFV 216          
BLAST of CN188635 vs. ExPASy Swiss-Prot
Match: IF4E_HUMAN (Eukaryotic translation initiation factor 4E OS=Homo sapiens GN=EIF4E PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.926e-24
Identity = 56/162 (34.57%), Postives = 89/162 (54.94%), Query Frame = -3
Query:  264 SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVS----GRFWEDLVLALVGDQL-DYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPH-DASLRDNSSYRNTWL 731
            +++ N++ I  F TVE FW  Y H+   S L    D  LFK+GI P+WED  N  GG+W+I   K        RFW + +L L+G+   DY D++CGAV+++R   D +++W     + +AV  +    K  L LP   V+ Y+ H D + +  S+ +N ++
Sbjct:   55 TWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFV 216          
BLAST of CN188635 vs. ExPASy Swiss-Prot
Match: IF4E_RAT (Eukaryotic translation initiation factor 4E OS=Rattus norvegicus GN=Eif4e PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.011e-23
Identity = 56/162 (34.57%), Postives = 88/162 (54.32%), Query Frame = -3
Query:  264 SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVS----GRFWEDLVLALVGDQL-DYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPH-DASLRDNSSYRNTWL 731
            +++ N++ I  F TVE FW  Y H+   S L    D  LFK+GI P+WED  N  GG+W+I   K        RFW + +L L+G+   DY D++CGAV+++R   D +++W     +  AV  +    K  L LP   V+ Y+ H D + +  S+ +N ++
Sbjct:   55 TWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFV 216          
The following BLAST results are available for this feature:
BLAST of CN188635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF4E3_ARATH9.922e-8889.35Eukaryotic translation initiation factor 4E type 3... [more]
IF4E2_MOUSE9.395e-4653.16Eukaryotic translation initiation factor 4E type 2... [more]
IF4E2_HUMAN1.227e-4553.16Eukaryotic translation initiation factor 4E type 2... [more]
IF4E4_CAEEL1.552e-4046.63Eukaryotic translation initiation factor 4E-4 OS=C... [more]
IF4E3_CAEEL2.406e-2536.94Eukaryotic translation initiation factor 4E-3 OS=C... [more]
IF4E_DROME3.142e-2533.96Eukaryotic translation initiation factor 4E OS=Dro... [more]
IF4E1_ARATH3.142e-2540.43Eukaryotic translation initiation factor 4E-1 OS=A... [more]
IF4E_BOVIN2.660e-2435.19Eukaryotic translation initiation factor 4E OS=Bos... [more]
IF4E_HUMAN5.926e-2434.57Eukaryotic translation initiation factor 4E OS=Hom... [more]
IF4E_RAT1.011e-2334.57Eukaryotic translation initiation factor 4E OS=Rat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006H14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006H14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188635 ID=CN188635; Name=CN188635; organism=Citrus sinensis; type=EST; length=766bp
CCTTTTTATCAATATGAAGACGTACTCATTTATGAAACCATCATTAACCT
TCCATTTTTGGATGGTATCGATCTACAATTAATTATCAAGATCTTAACCT
ATCGAGACGGCCCACATGATTCTCACATCACAATTCACGGATAACTGCAT
CATCGGGTGAAAGAAATTCAAACAGAGCATGTAATAAAAACAGAAGACTT
CCTACTGTCATGTTCTTTCTCCATCAGTGCAGTGTCATAAAGCCTAGTGA
AATTCTAGCCTCTCAACCATGTGTTTCTGTATGACGAGTTATCGCGCAGA
GAAGCATCATGGGGCTTGTATTCCATAACATAGCTGTGGGGCAGCTTTAA
GTGCCGTTTGATAGAATCTCTAAGAGCCATCACAGCCTGATGATCAGATG
CATTGCGGTTCCACACACTCAATATATCTTCATTGAATCGAATGCTTAGG
ACTGCACCACATATGTTATCACCATAGTCAAGCTGGTCACCCACCAAGGC
AAGAACCAGATCTTCCCAAAAGCGACCTGATACAACTTTCTTGAACCTTA
TTATCCATTTACCGCCATTGCAATTTGCAGAGTCCTCCCATAATGGGCGA
ATTCCTTCCTTGAAAAGATGCAAATCTGTAGGGCTTGGCAACAAAGAAGG
ACGAGCCAAGTGGCAATAGCAGACCCAAAAGCCTTCAACAGTACTGAAGT
CCACAATTTTCTTTATGTTGTCCTCATAGGATGTTTGAGTTCGAACTCCA
GGTGTTCGACGAGTGT
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