CN181588

Overview
NameCN181588
Unique NameCN181588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9133 contig Csv1_Contig9133:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181588 vs. ExPASy Swiss-Prot
Match: PPT1_CAEEL (Palmitoyl-protein thioesterase 1 OS=Caenorhabditis elegans GN=ppt-1 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.005e-20
Identity = 45/100 (45.00%), Postives = 66/100 (66.00%), Query Frame = -1
Query:  416 LNNELPDKRNSTYKERFSCLQNLVLIMFKDDKVLIPKETAWFGYYPDGAFSPVLPPQKTKLYTEDWIGLKTLDDAGRVHFISVAGGHLKISKADMKKHII 715
            +NNE  +  N TYK     L+NLVL+ F  D +++PK+++WFG+Y DG    +LP  +T LY ED IGLK L ++GR+HF+ V G HL+I ++ +   II
Sbjct:  196 INNE--NNNNPTYKRNLLSLKNLVLVKFNQDHMVVPKDSSWFGFYKDGDIDTILPMNETDLYKEDRIGLKKLHESGRIHFMDVDGDHLQIPRSVLVNDII 293          
BLAST of CN181588 vs. ExPASy Swiss-Prot
Match: PPT1_RAT (Palmitoyl-protein thioesterase 1 OS=Rattus norvegicus GN=Ppt1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.621e-18
Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = -1
Query:  404 NSTYKERFSCLQNLVLIMFKDDKVLIPKETAWFGYYPDGAFSPVLPPQKTKLYTEDWIGLKTLDDAGRVHFISVAGGHLKISKADMKKHIIPYLK 688
            N +YKE    L+  V++ F +D ++ P ++ WFG+Y  G     +P Q+T LYTED +GLK +D AG++ F++  G HL+ISK     HIIP+LK
Sbjct:  212 NESYKENLMALKKFVMVKFFNDSIVDPVDSEWFGFYRSGQAKETIPLQETTLYTEDRLGLKKMDKAGKLVFLAKEGDHLQISKEWFTAHIIPFLK 306          
BLAST of CN181588 vs. ExPASy Swiss-Prot
Match: PPT1_MOUSE (Palmitoyl-protein thioesterase 1 OS=Mus musculus GN=Ppt1 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.758e-17
Identity = 39/95 (41.05%), Postives = 61/95 (64.21%), Query Frame = -1
Query:  404 NSTYKERFSCLQNLVLIMFKDDKVLIPKETAWFGYYPDGAFSPVLPPQKTKLYTEDWIGLKTLDDAGRVHFISVAGGHLKISKADMKKHIIPYLK 688
            N +YK+    L+  V++ F +D ++ P ++ WFG+Y  G     +P Q++ LYTED +GLK +D AG++ F++  G HL+ISK     HIIP+LK
Sbjct:  212 NESYKKNLMALKKFVMVKFFNDSIVDPVDSEWFGFYRSGQAKETIPLQESTLYTEDRLGLKKMDKAGKLVFLAKEGDHLQISKEWFTAHIIPFLK 306          
BLAST of CN181588 vs. ExPASy Swiss-Prot
Match: PPT1_MACFA (Palmitoyl-protein thioesterase 1 OS=Macaca fascicularis GN=PPT1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.361e-16
Identity = 36/94 (38.30%), Postives = 61/94 (64.89%), Query Frame = -1
Query:  407 NSTYKERFSCLQNLVLIMFKDDKVLIPKETAWFGYYPDGAFSPVLPPQKTKLYTEDWIGLKTLDDAGRVHFISVAGGHLKISKADMKKHIIPYL 688
            N +YK+    L+  V++ F +D ++ P ++ WFG+Y  G     +P Q+T LYT+D +GLK +D+AG++ F++  G HL++S+     HIIP+L
Sbjct:  212 NESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKETIPLQETSLYTQDRLGLKEMDNAGQLVFLATEGDHLQLSEEWFYAHIIPFL 305          
BLAST of CN181588 vs. ExPASy Swiss-Prot
Match: PPT1_HUMAN (Palmitoyl-protein thioesterase 1 OS=Homo sapiens GN=PPT1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.361e-16
Identity = 36/94 (38.30%), Postives = 61/94 (64.89%), Query Frame = -1
Query:  407 NSTYKERFSCLQNLVLIMFKDDKVLIPKETAWFGYYPDGAFSPVLPPQKTKLYTEDWIGLKTLDDAGRVHFISVAGGHLKISKADMKKHIIPYL 688
            N +YK+    L+  V++ F +D ++ P ++ WFG+Y  G     +P Q+T LYT+D +GLK +D+AG++ F++  G HL++S+     HIIP+L
Sbjct:  212 NESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKETIPLQETSLYTQDRLGLKEMDNAGQLVFLATEGDHLQLSEEWFYAHIIPFL 305          
BLAST of CN181588 vs. ExPASy Swiss-Prot
Match: PPT1_BOVIN (Palmitoyl-protein thioesterase 1 OS=Bos taurus GN=PPT1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.973e-16
Identity = 35/95 (36.84%), Postives = 62/95 (65.26%), Query Frame = -1
Query:  404 NSTYKERFSCLQNLVLIMFKDDKVLIPKETAWFGYYPDGAFSPVLPPQKTKLYTEDWIGLKTLDDAGRVHFISVAGGHLKISKADMKKHIIPYLK 688
            N +YK+    L+  V++ F +D ++ P ++ WFG+Y  G     +P Q++ LYT+D +GLK +D AG++ F+++ G HL++S+     HIIP+L+
Sbjct:  212 NESYKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQDRLGLKAMDKAGQLVFLALEGDHLQLSEEWFYAHIIPFLE 306          
BLAST of CN181588 vs. ExPASy Swiss-Prot
Match: PPT3_DICDI (Palmitoyl-protein thioesterase 3 OS=Dictyostelium discoideum GN=ppt3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 38/87 (43.68%), Postives = 57/87 (65.52%), Query Frame = -1
Query:  455 LNNELPDKRNSTYKERFSCLQNLVLIMFKDDKVLIPKETAWFGYYPDGAFSPVLPPQKTKLYTEDWIGLKTLDDAGRVHFISVAGGH 715
            +NNE   K N+TYKE  + L  +VL    +DK +IPKE+ WF +Y DG+ + V+P Q+   Y+EDW+GL+TLD++ R+ F +    H
Sbjct:  181 INNEYQVK-NTTYKENLTKLNAMVLTYSTNDKTIIPKESGWFSFYADGSGTEVVPLQQQTQYSEDWLGLRTLDESNRLFFYTTTCTH 266          
The following BLAST results are available for this feature:
BLAST of CN181588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PPT1_CAEEL6.005e-2045.00Palmitoyl-protein thioesterase 1 OS=Caenorhabditis... [more]
PPT1_RAT5.621e-1843.16Palmitoyl-protein thioesterase 1 OS=Rattus norvegi... [more]
PPT1_MOUSE4.758e-1741.05Palmitoyl-protein thioesterase 1 OS=Mus musculus G... [more]
PPT1_MACFA2.361e-1638.30Palmitoyl-protein thioesterase 1 OS=Macaca fascicu... [more]
PPT1_HUMAN2.361e-1638.30Palmitoyl-protein thioesterase 1 OS=Homo sapiens G... [more]
PPT1_BOVIN8.973e-1636.84Palmitoyl-protein thioesterase 1 OS=Bos taurus GN=... [more]
PPT3_DICDI4.453e-1543.68Palmitoyl-protein thioesterase 3 OS=Dictyostelium ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001C19_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181588 ID=CN181588; Name=CN181588; organism=Citrus sinensis; type=EST; length=715bp
AGAAGTTGGAAGGATGAGTTTAAATGAGATACATATAGAACTTTTCGCAT
TGGATGCAACCCAAATTACAATTAACTAACGTCTTAAGACGAGTTTTACA
CACCAAGGAGTGCTAGATGGTAGGCCATCTTGGATCATCAATGAAACTAG
CCATGCGTGGAGATGATCCCCATCAATGAGTGGAAGTAGTGTTTTTCATA
GTAATATACTTTAGAAATGGTCATATCAATCTAAATTAATGGGCTTATCC
TCTTGAGACTTCTAGTAGTTCGACGAAAAAGCTCTTCACGGAAGATGGCC
ATACATAGGATGATGATCCATCGAACACCAGTTCAGTGGACCCCTCTTCC
TCGTTCGGTCCTTTTGTCTTCCTGCTTTCTATCACTCTGACCGATGCCTG
ATCCTTCAAATAAGGAATAATATGCTTCTTCATATCAGCTTTGGAGATTT
TCAGATGACCTCCTGCCACACTGATGAAGTGAACCCTTCCAGCATCATCT
AAGGTTTTAAGGCCGATCCAGTCTTCAGTATAAAGCTTTGTCTTTTGTGG
AGGCAGAACTGGACTGAAGGCCCCATCTGGATAATATCCGAACCAGGCTG
TTTCCTTGGGTATCAAAACCTTGTCATCCTTGAACATTATAAGCACTAAG
TTTTGCAAGCAGCTGAAGCGTTCCTTGTAAGTGGAGTTCCTCTTATCAGG
GAGTTCGTTGTTAAG
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