CN181587

Overview
NameCN181587
Unique NameCN181587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1881 contig Csv1_Contig1881:53..353. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181587 vs. ExPASy Swiss-Prot
Match: RK28_ARATH (50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana GN=RPL28 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.743e-19
Identity = 53/94 (56.38%), Postives = 64/94 (68.09%), Query Frame = 2 
Query:   20 MATMATPGGVLLGNTSNLPFRRPRLSPKSMVKAVSSSEELGFVTSQLSGIKISYSLPDVATPISSRPFAPGLQPIVARRVCPFTGKKSNKANKV 301
            M TMAT G  L          R   S KSM K+  +S+ELGF+TSQLSG++ISY+  DV   IS   F PG+QPIVARR+CPFTGKK+N+ANKV
Sbjct:    1 MTTMATQGAWL----------RMTSSAKSMTKSTVTSKELGFLTSQLSGLRISYTPSDVINRISLPSF-PGIQPIVARRICPFTGKKANRANKV 83
[Close]
BLAST of CN181587 vs. ExPASy Swiss-Prot
Match: RK28_TOBAC (50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum GN=RPL28 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.052e-12
Identity = 45/94 (47.87%), Postives = 57/94 (60.64%), Query Frame = 2 
Query:   20 MATMATPGGVLLGNTSNLPFRRPRLSPKSMVKAVSSSEELGFVTSQLSGIKISYSLPDVATPISSRPFAPGLQPIVARRVCPFTGKKSNKANKV 301
            MATM    G+ L        R   ++ ++ +     S EL FVTSQLSG+KIS +    ++   S PF P LQP VARR+CPFTGKKSN+ANKV
Sbjct:    1 MATMVA--GISLRGPVMSSHRTFSVTKRASLPQSKLSSELSFVTSQLSGLKISSTHFISSSAPLSVPFKPSLQP-VARRICPFTGKKSNRANKV 91
The following BLAST results are available for this feature:
BLAST of CN181587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RK28_ARATH5.743e-1956.3850S ribosomal protein L28, chloroplastic OS=Arabid... [more]
RK28_TOBAC3.052e-1247.8750S ribosomal protein L28, chloroplastic OS=Nicoti... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001C18_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181587 ID=CN181587; Name=CN181587; organism=Citrus sinensis; type=EST; length=301bp
GAGGAGGGAATCGAAAAGAATGGCAACAATGGCGACACCGGGAGGAGTTT
TATTGGGAAACACTTCCAATCTACCCTTTCGCCGCCCACGTCTGTCTCCG
AAGTCCATGGTTAAGGCAGTCTCCTCCTCGGAAGAACTGGGTTTCGTTAC
TTCACAACTCAGTGGCATCAAAATTTCGTACAGCCTACCTGACGTGGCCA
CACCCATTTCCTCTCGTCCTTTCGCCCCGGGTCTTCAACCTATTGTTGCG
CGTAGAGTGTGCCCCTTCACTGGAAAGAAATCAAACAAGGCAAACAAAGT
T
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