CN181572

Overview
NameCN181572
Unique NameCN181572
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig446 contig Csv1_Contig446:793..1483. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181572 vs. ExPASy Swiss-Prot
Match: JMT_BRARP (Jasmonate O-methyltransferase OS=Brassica rapa subsp. pekinensis GN=JMT PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 49/126 (38.89%), Postives = 74/126 (58.73%), Query Frame = -1
Query:  332 IEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNAYQNGFKFNEAVDAFN------DGGYNVANCMRAVAEPLLVSQFGEAIIDELFKRYREIVADRMSKEKTKFINVTVSLTKIG 691
            IEEE ++ FN P Y  SP E+K  + KEGSF+ID LE+S V+W   + G   +++ D           G  VA  +RAV EP+L   FG+ ++DELF+RY ++V + +     ++  V VSL ++G
Sbjct:  270 IEEENIDAFNAPYYAASPEELKMAIEKEGSFSIDRLEISPVDW---EGGSISDDSYDIVRFKPEALASGRRVAKTIRAVVEPMLEPTFGQKVMDELFERYAKLVGEYVYVSSPRYTIVIVSLLRMG 392          
BLAST of CN181572 vs. ExPASy Swiss-Prot
Match: JMT_ARATH (Jasmonate O-methyltransferase OS=Arabidopsis thaliana GN=JMT PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 50/127 (39.37%), Postives = 72/127 (56.69%), Query Frame = -1
Query:  332 IEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNAYQNGFKFNEAVDAF-------NDGGYNVANCMRAVAEPLLVSQFGEAIIDELFKRYREIVADRMSKEKTKFINVTVSLTKIG 691
            IEEEK++ FN P Y  S  E+K  + KEGSF+ID LE+S ++W   + G    E+ D            G  V+N +RAV EP+L   FGE ++DELF+RY +IV +       ++  V +SL + G
Sbjct:  266 IEEEKIDAFNAPYYAASSEELKMVIEKEGSFSIDRLEISPIDW---EGGSISEESYDLVIRSKPEALASGRRVSNTIRAVVEPMLEPTFGENVMDELFERYAKIVGEYFYVSSPRYAIVILSLVRAG 389          
BLAST of CN181572 vs. ExPASy Swiss-Prot
Match: BAMT_ANTMA (Benzoate carboxyl methyltransferase OS=Antirrhinum majus GN=BAMT PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.817e-16
Identity = 41/121 (33.88%), Postives = 74/121 (61.16%), Query Frame = -1
Query:  338 IEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNAYQ---NGFKFNEAVDAFNDGGYNVANCMRAVAEPLLVSQFGEAIIDELFKRYREIVADRMSKEKTKFINVTVSLTK 691
            ++ + +  FNIP Y+P   E+++ ++ EGSFT+D LEV  V W+A     +  + + ++      G  VA+C+RA+ EP+L S FG  I+D LF +Y + + + +S E + + ++ VSL++
Sbjct:  243 VKMDDLYSFNIPIYSPCTREVEAAILSEGSFTLDRLEVFRVCWDASDYTDDDDQQDPSIFGKQRSGKFVADCVRAITEPMLASHFGSTIMDLLFGKYAKKIVEHLSVENSSYFSIVVSLSR 363          
The following BLAST results are available for this feature:
BLAST of CN181572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
JMT_BRARP5.326e-1838.89Jasmonate O-methyltransferase OS=Brassica rapa sub... [more]
JMT_ARATH2.024e-1739.37Jasmonate O-methyltransferase OS=Arabidopsis thali... [more]
BAMT_ANTMA3.817e-1633.88Benzoate carboxyl methyltransferase OS=Antirrhinum... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001C10_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181572 ID=CN181572; Name=CN181572; organism=Citrus sinensis; type=EST; length=691bp
GGCCCATACTAATTCTTTCATTCGAAGAGAATACAGTATTAATGCCGACA
CTTGTTGATACCAAAATTTACTGACATATTCAAAGCAACGAGTGATAGAA
TTAACTATGCTAATTAAACATTCTAAATATTATCCTGAAATGTGCATCTC
AAATGAGTGAAGTAACATTTATTAAGTGGACGGTGATGTTGAACATTTTT
TAATACCCCATTTTCCCATCCACAATATTGAAGCACATCAATGAGGACGC
ATCTTCTTGGGATAAATTATTGGAAAGGCTAACATGCCTCTCAAGTTTTA
TTTCTTAATAATTGTCTTATCTTAGTGATCATCCAATTTTCGTCAAGGAA
ACTGTCACGTTGATAAACTTAGTCTTTTCCTTAGACATGCGATCGGCAAC
AATTTCCCTGTACCTTTTAAACAGCTCATCAATGATTGCTTCACCAAACT
GACTAACAAGCAAGGGCTCGGCCACAGCTCTCATGCAATTCGCAACGTTG
TATCCTCCATCATTAAATGCATCAACGGCCTCGTTAAACTTAAAACCATT
CTGATAAGCGTTCCAGTTAACTTCAGAAACCTCAAGGTGATCAATGGTGA
AGGATCCTTCCTTTATAACCTCCGATTTTATTTCAGCTGGTGATGGTGTA
TACTGCGGAATGTTGAAACAATTCACTTTCTCTTCTTCTAT
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