CN181571

Overview
NameCN181571
Unique NameCN181571
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2270 contig Csv1_Contig2270:1..658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN181571 vs. ExPASy Swiss-Prot
Match: RFA1_DROME (Replication protein A 70 kDa DNA-binding subunit OS=Drosophila melanogaster GN=RpA-70 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 60/197 (30.46%), Postives = 96/197 (48.73%), Query Frame = 1 
Query:   94 VVQVLDLKLTGN-----RYMFNASDGKK-RLKAILPSNLSSEVISGNIQNKGLIRLLDYALNEIPTKS--EKYLIVTKCEVVSPALEMEIKIEVKSDESGIILKPKQEDEVKKD-GPGIVLKPKQEMVAKSAAQILRDQNGNMAPAARLAMTRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFYVEL 657
            V+Q+L +K   +     RY    SDGK     A+L S L+    +G ++   +++L  Y  + +      ++ LI+++  VV+P  E++ KI               E+  K+D  P   +    + +AK       + N  M  +    MT   HP+ SL+PYQ  W IK RVTSK  +RT+ NARGEG +F ++L
Sbjct:   24 VLQILAIKKINSAADSERYRILISDGKYFNSYAMLASQLNVMQHNGELEEFTIVQLDKYVTSLVGKDGAGKRVLIISELTVVNPGAEVKSKIGEPVT---------YENAAKQDLAPKPAVTSNSKPIAKKEPSHNNNNNIVMNSSINSGMT---HPISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDL 208
The following BLAST results are available for this feature:
BLAST of CN181571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RFA1_DROME6.103e-1330.46Replication protein A 70 kDa DNA-binding subunit O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001C09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181571 ID=CN181571; Name=CN181571; organism=Citrus sinensis; type=EST; length=658bp
GAGGAGAAAATGGACAAGACAGTGAGTCCGGATGCAATTTCAACGATTTT
ATCAAACCCATCTCCCGAGTCGTCCTCTGATATTCCAGAGATCGTTGTTC
AAGTTTTAGATCTCAAGCTCACCGGCAATCGATACATGTTTAATGCGAGT
GATGGGAAGAAGAGATTAAAAGCAATTTTGCCTTCAAATTTATCATCGGA
GGTTATTTCTGGAAACATTCAAAACAAGGGTCTTATTCGGCTTCTTGATT
ATGCGCTCAATGAAATCCCAACTAAATCTGAGAAATACCTGATTGTGACG
AAATGTGAGGTGGTGTCTCCTGCACTTGAAATGGAGATCAAGATTGAGGT
GAAGAGTGATGAATCTGGCATAATATTGAAACCAAAACAAGAAGATGAGG
TAAAAAAAGATGGGCCTGGCATTGTTTTGAAACCTAAGCAAGAGATGGTT
GCCAAATCTGCTGCTCAAATATTACGCGATCAGAATGGAAATATGGCCCC
TGCTGCCCGCTTGGCTATGACAAGAAGGGTTCATCCTCTTGTTTCTTTGA
ATCCTTACCAAGGTAATTGGACCATCAAGGTTCGTGTTACAAGCAAAGGA
AACATGCGTACTTATAAGAATGCGAGAGGTGAAGGATGCGTCTTCTATGT
GGAGTTAA
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