CN181569
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN181569 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 7.549e-23 Identity = 52/61 (85.25%), Postives = 58/61 (95.08%), Query Frame = 1
Query: 526 TNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMD 708
+NKDI AQI+SA+I GD VLA+AY+HELP+YGLEVGLTNYAAAYCTGLLLARRVLKMLEMD
Sbjct: 56 SNKDITAQIISASIAGDLVLASAYSHELPQYGLEVGLTNYAAAYCTGLLLARRVLKMLEMD 116 HSP 2 Score: 107.071 bits (266), Expect = 9.780e-23 Identity = 50/54 (92.59%), Postives = 53/54 (98.15%), Query Frame = 3
Query: 18 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVR 179
MAF KAQK+KAYFKR+QVK+KRRREGKTDYRARIRLINQDKNKYNTPKYRFVVR
Sbjct: 1 MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVR 54
BLAST of CN181569 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3) HSP 1 Score: 107.457 bits (267), Expect = 7.549e-23 Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 1
Query: 526 TNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMD 708
TNKDI+AQIVSA+I GD V A+AYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMD
Sbjct: 56 TNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMD 116 HSP 2 Score: 103.605 bits (257), Expect = 1.081e-21 Identity = 47/57 (82.46%), Postives = 53/57 (92.98%), Query Frame = 3
Query: 18 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFVS 188
M FVK+ KS AYFKR+QVK++RRR+GKTDYRARIRLINQDKNKYNTPKYRFVVRF +
Sbjct: 1 MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTN 57
BLAST of CN181569 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2) HSP 1 Score: 107.457 bits (267), Expect = 7.549e-23 Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 1
Query: 526 TNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMD 708
TNKDI+AQIVSA+I GD V A+AYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMD
Sbjct: 56 TNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMD 116 HSP 2 Score: 103.219 bits (256), Expect = 1.412e-21 Identity = 47/57 (82.46%), Postives = 53/57 (92.98%), Query Frame = 3
Query: 18 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFVS 188
M FVK+ KS AYFKR+QVK++RRR+GKTDYRARIRLINQDKNKYNTPKYRFVVRF +
Sbjct: 1 MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTN 57
BLAST of CN181569 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21 Identity = 46/55 (83.64%), Postives = 51/55 (92.73%), Query Frame = 3
Query: 24 FVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFVS 188
FVK QK+ AY+KRFQVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFVVRF +
Sbjct: 4 FVKTQKTNAYYKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTN 58 HSP 2 Score: 101.293 bits (251), Expect = 5.410e-21 Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 1
Query: 526 TNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMD 708
TNKDI AQIV A I GD V+AAAY+HELPRYGLEVGLTNYAAAYCTGLLLARRVLK+ +D
Sbjct: 57 TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLD 117
BLAST of CN181569 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.410e-21 Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 1
Query: 526 TNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMD 708
TNKDI AQIV A I GD V+AAAY+HELPRYGLEVGLTNYAAAYCTGLLLARRVLK+ +D
Sbjct: 57 TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLD 117 HSP 2 Score: 99.7525 bits (247), Expect = 1.561e-20 Identity = 46/55 (83.64%), Postives = 50/55 (90.91%), Query Frame = 3
Query: 24 FVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFVS 188
FVK QK+ AY KRFQVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFVVRF +
Sbjct: 4 FVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTN 58
BLAST of CN181569 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.685e-20 Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 1
Query: 526 TNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMD 708
TNKDI AQIV A I GD V+AAAY+HELPRYGLEVGLTNYAAAYCTGLLLARRVL + +D
Sbjct: 57 TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLD 117 HSP 2 Score: 95.9005 bits (237), Expect = 2.255e-19 Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 3
Query: 24 FVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFV 173
FVK QK+ AYFKRFQVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFV
Sbjct: 7 FVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV 56
BLAST of CN181569 vs. ExPASy Swiss-Prot
Match: RL5_EIMTE (60S ribosomal protein L5 OS=Eimeria tenella GN=RPL5 PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-19 Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = 3
Query: 18 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVR 179
MAFVKA K+KAYFKRFQVKY+RRREGKTDY AR RLI QDKNKYN PKYRFVVR
Sbjct: 1 MAFVKAIKNKAYFKRFQVKYRRRREGKTDYAARRRLILQDKNKYNAPKYRFVVR 54 HSP 2 Score: 68.1662 bits (165), Expect = 5.076e-11 Identity = 31/56 (55.36%), Postives = 44/56 (78.57%), Query Frame = 1
Query: 526 TNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLK 693
TN ++ Q++ A + GD ++ +A + EL RYG++VGLTNY+AAY TGLLLARR+LK
Sbjct: 56 TNSRVLCQVMYATLQGDRLVCSADSQELTRYGIKVGLTNYSAAYATGLLLARRLLK 111
BLAST of CN181569 vs. ExPASy Swiss-Prot
Match: RL5_SUBDO (60S ribosomal protein L5 OS=Suberites domuncula GN=RPL5 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.560e-19 Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 3
Query: 18 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFVS 188
M FVK K+KAYFKR+QVK++RRREGKTDYRAR RL+ QDKNKYNTPKYR V+RF +
Sbjct: 1 MPFVKVIKNKAYFKRYQVKFRRRREGKTDYRARKRLVVQDKNKYNTPKYRIVIRFTN 57 HSP 2 Score: 90.5077 bits (223), Expect = 9.550e-18 Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 1
Query: 526 TNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKML 699
TN DII QI+ A I GD VL +AYAHELPRYG++VGLTNYAAAYCTGLLLARR+L L
Sbjct: 56 TNTDIICQIIYAKIEGDKVLVSAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTNL 113
BLAST of CN181569 vs. ExPASy Swiss-Prot
Match: RL5_STYCL (60S ribosomal protein L5 OS=Styela clava GN=RPL5 PE=3 SV=3) HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18 Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = 3
Query: 18 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFVS 188
M FVK K+KAYFKR+QVKYKRRR+GKTDY AR RL+ QDKNKYNTPKYR +VRF +
Sbjct: 1 MGFVKVVKNKAYFKRYQVKYKRRRQGKTDYFARKRLVVQDKNKYNTPKYRMIVRFTN 57 HSP 2 Score: 91.2781 bits (225), Expect = 5.599e-18 Identity = 43/61 (70.49%), Postives = 50/61 (81.97%), Query Frame = 1
Query: 526 TNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMD 708
TNKDI+ QI A I GD V+ AAYAHELPRYG++VGLTNYAAAYCTGLLL+RR+L +D
Sbjct: 56 TNKDIVCQIAYARIEGDVVICAAYAHELPRYGVKVGLTNYAAAYCTGLLLSRRLLNKFGLD 116
BLAST of CN181569 vs. ExPASy Swiss-Prot
Match: RL5_HELAN (60S ribosomal protein L5 OS=Helianthus annuus GN=RPL5A PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18 Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 3
Query: 18 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRF 182
M FVK K+K YFKR+QVK+KRRREGKTDY AR RLI QDKNKYNTPKYR VVRF
Sbjct: 1 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYFARKRLIAQDKNKYNTPKYRLVVRF 55 HSP 2 Score: 87.0409 bits (214), Expect = 1.056e-16 Identity = 39/61 (63.93%), Postives = 50/61 (81.97%), Query Frame = 1
Query: 526 TNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMD 708
+N+DI Q+ + I GD +L AAYAHELP+YG++VGLTNYAAAYCTGLLLAR++L L +D
Sbjct: 56 SNRDITCQVAYSRIEGDKILCAAYAHELPQYGVKVGLTNYAAAYCTGLLLARKLLSQLGLD 116 The following BLAST results are available for this feature:
BLAST of CN181569 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 37
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181569 ID=CN181569; Name=CN181569; organism=Citrus sinensis; type=EST; length=708bpback to top |