CN181568

Overview
NameCN181568
Unique NameCN181568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length546
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9350 contig Csv1_Contig9350:604..1149. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181568 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 4.748e-49
Identity = 92/113 (81.42%), Postives = 103/113 (91.15%), Query Frame = -1
Query:  208 KDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAVDEEDE 546
            K+G+QLD EVHRKYI+GGHVAAYM TLMEDEPEKYQSHF+EYIKKGI+AD LE LYKKVHAAIRA+P  KKS+KP PK HKRYNLKKLTY+ERKA+LVERLNALNSA D +D+
Sbjct:  184 KNGQQLDVEVHRKYIFGGHVAAYMRTLMEDEPEKYQSHFSEYIKKGIEADELEGLYKKVHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAADGDDD 296          
BLAST of CN181568 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.438e-45
Identity = 84/113 (74.34%), Postives = 99/113 (87.61%), Query Frame = -1
Query:  208 KDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAVDEEDE 546
            KD KQLD+++HRKYIYGGHVA YM ++ E+EPEK+Q+HF+EY+KKGIDADG+EALYKKVHAAIRADPTM KS K  P  HKRYNLKKLTYE+RKA LVERLNALNS+   +D+
Sbjct:  185 KDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDD 297          
BLAST of CN181568 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 2.438e-45
Identity = 84/113 (74.34%), Postives = 99/113 (87.61%), Query Frame = -1
Query:  208 KDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAVDEEDE 546
            KD KQLD+++HRKYIYGGHVA YM ++ E+EPEK+Q+HF+EY+KKGIDADG+EALYKKVHAAIRADPTM KS K  P  HKRYNLKKLTYE+RKA LVERLNALNS+   +D+
Sbjct:  185 KDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDD 297          
BLAST of CN181568 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 5.432e-45
Identity = 83/113 (73.45%), Postives = 99/113 (87.61%), Query Frame = -1
Query:  208 KDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAVDEEDE 546
            KD KQLD+++HRKYIYGGHVA YM ++ E+EPEK+Q+HF+EY+KKGIDADG+E+LYKKVHAAIRADPTM KS K  P  HKRYNLKKLTYE+RKA LVERLNALNS+   +D+
Sbjct:  185 KDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDD 297          
BLAST of CN181568 vs. ExPASy Swiss-Prot
Match: RL5_SOLME (60S ribosomal protein L5 (Fragment) OS=Solanum melongena GN=RPL5 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.210e-44
Identity = 85/113 (75.22%), Postives = 96/113 (84.96%), Query Frame = -1
Query:  208 KDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAVDEEDE 546
            KD KQLDAEVHRKYIYGGHVAAYM+ LMEDEPEKYQSHF+ YIK  +  D +E +YKKVHAAIR DP+ KKS+K  PK HKRYNLKKLTYEERKAKL+ERLNALN+A   +D+
Sbjct:    3 KDSKQLDAEVHRKYIYGGHVAAYMNILMEDEPEKYQSHFSSYIKADLAPDNIEEMYKKVHAAIRPDPSPKKSQKQPPKTHKRYNLKKLTYEERKAKLIERLNALNAAGGNDDD 115          
BLAST of CN181568 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 2.523e-42
Identity = 79/113 (69.91%), Postives = 95/113 (84.07%), Query Frame = -1
Query:  208 KDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAVDEEDE 546
            K+ KQLDAE+HR YIYGGHV+ YM  L EDEPEK Q+HF+ YIKKG++A+ +E LYKKVHAAIRADP  KK+ KPAPK+HKRYNLKKLTYEERK KL+ER+ ALN A  ++D+
Sbjct:  184 KENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKVHAAIRADPNPKKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKALNGAGGDDDD 296          
BLAST of CN181568 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 7.341e-42
Identity = 78/113 (69.03%), Postives = 95/113 (84.07%), Query Frame = -1
Query:  208 KDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAVDEEDE 546
            K+ KQLDAE+HR YIYGGHV+ YM  L EDEPEK Q+HF+ YIKKG++A+ +E +YKKVHAAIRA+P  KK+EK APKEHKRYNLKKLTYEERK KL+ER+ ALN A  ++D+
Sbjct:  184 KENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVKALNGAGGDDDD 296          
BLAST of CN181568 vs. ExPASy Swiss-Prot
Match: RL5_NEUCR (60S ribosomal protein L5 OS=Neurospora crassa GN=rpl-5 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.632e-23
Identity = 56/113 (49.56%), Postives = 75/113 (66.37%), Query Frame = -1
Query:  229 DGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHK--------RYNLKKLTYEERKAKLVERLNALNS 543
            + ++LDAE  +KYI+GGHVA YM TL +D+ E+Y+S F  YI+  ++ADGLE LY + HAAIR DP  KK+E  APK+ K        +Y   KLT E+R A + ER+ AL S
Sbjct:  189 ESEELDAETLKKYIFGGHVAEYMETLADDDEERYKSQFNRYIEDDLEADGLEDLYAEAHAAIREDP-FKKAESEAPKKTKEEWKAESLKYKKSKLTREQRAAGVQERIAALRS 300          
BLAST of CN181568 vs. ExPASy Swiss-Prot
Match: RL5_LYSTE (60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.207e-21
Identity = 48/111 (43.24%), Postives = 70/111 (63.06%), Query Frame = -1
Query:  211 DGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAVDEED 543
            + K  +A+VHR++I+  H+A YM TL E+EPE +Q  F++YIK GI ADG+E +YKK H AIRADP   +  K      KR+N  KLT  ERK ++ +   +    ++E +
Sbjct:  186 ESKSFNADVHRQHIFAHHIANYMKTLEENEPENFQRQFSQYIKNGITADGIEEMYKKAHEAIRADPDRAEIVKTKEPVKKRWNRAKLTLSERKDRVKQIKASFQKKLEETE 296          
BLAST of CN181568 vs. ExPASy Swiss-Prot
Match: RL5_DUNSA (60S ribosomal protein L5 OS=Dunaliella salina GN=RPL5 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.219e-20
Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = -1
Query:  295 KQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYN 537
            K+LD EV +KYIYGGHVA Y  T+ E+EPEKYQ+HF+ Y++  I+ DG+E +YK+VHA IR +P   K E+  P + KR++
Sbjct:  186 KKLDTEVLQKYIYGGHVAEYQETMQEEEPEKYQAHFSSYVENEIEPDGIEDMYKEVHAKIRENPCPPKKERTKPADAKRWS 266          
The following BLAST results are available for this feature:
BLAST of CN181568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL5_CUCSA4.748e-4981.4260S ribosomal protein L5 OS=Cucumis sativus GN=RPL... [more]
RL51_ORYSJ2.438e-4574.3460S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ORYSI2.438e-4574.3460S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL52_ORYSJ5.432e-4573.4560S ribosomal protein L5-2 OS=Oryza sativa subsp. ... [more]
RL5_SOLME1.210e-4475.2260S ribosomal protein L5 (Fragment) OS=Solanum mel... [more]
RL51_ARATH2.523e-4269.9160S ribosomal protein L5-1 OS=Arabidopsis thaliana... [more]
RL52_ARATH7.341e-4269.0360S ribosomal protein L5-2 OS=Arabidopsis thaliana... [more]
RL5_NEUCR7.632e-2349.5660S ribosomal protein L5 OS=Neurospora crassa GN=r... [more]
RL5_LYSTE3.207e-2143.2460S ribosomal protein L5 OS=Lysiphlebus testaceipe... [more]
RL5_DUNSA1.219e-2053.0960S ribosomal protein L5 OS=Dunaliella salina GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001C08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181568 ID=CN181568; Name=CN181568; organism=Citrus sinensis; type=EST; length=546bp
ATTTCAACAAAAGCTAAAAATCTCAAAACCTTGTTATCTAATGAGAAATC
CAAGCTGCCAAATTGCCAAAACAGAAGATGATTAAAAATAAAAATAAAAA
TAAAAACTGGGCAAAGAAACATTTTTAGGTTCTAGCAACTGCAACAACAA
ATGTGTACTGCAGATTTGCCACATATTTTGAATTCATATCTAGTTATGAT
GCTTTCATTCGTCCTCCTCATCAACTGCCGAGTTAAGGGCATTCAGCCTT
TCAACCAGCTTCGCCTTCCTTTCCTCGTAAGTAAGCTTCTTCAAATTATA
CCTCTTATGTTCTTTGGGAGCTGGCTTCTCAGATTTCTTCATTGTAGGAT
CTGCACGAATGGCAGCATGAACCTTCTTGTACAGTGCCTCCAAGCCATCA
GCATCAATTCCTTTCTTGATGTACTCGGTGAAGTGAGATTGATACTTCTC
TGGCTCATCCTCCATCAATGTACTCATGTAAGCAGCAACATGTCCACCAT
AGATATACTTGCGGTGAACCTCAGCATCCAGCTGCTTGCCATCCTT
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