CN181567

Overview
NameCN181567
Unique NameCN181567
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length431
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181567_ssr5 microsatellite CN181567_ssr5:5..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13008 contig Csv1_Contig13008:103..534. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181567 vs. ExPASy Swiss-Prot
Match: FIL1_ANTMA (Stamen-specific protein FIL1 OS=Antirrhinum majus GN=FIL1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.196e-22
Identity = 47/76 (61.84%), Postives = 61/76 (80.26%), Query Frame = -2
Query:  203 LIAVAVQTQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSC 430
            L+A +     + +Q+C++ L NLN+CAP+VV G ATT PSSDCC ALQSVD +C CNT+RIA+R+P+QCNLPPLSC
Sbjct:   16 LVAQSQLITQSEAQTCSASLANLNACAPFVVLGAATT-PSSDCCTALQSVDHECLCNTLRIASRVPAQCNLPPLSC 90          
BLAST of CN181567 vs. ExPASy Swiss-Prot
Match: MEN8_SILLA (Protein MEN-8 OS=Silene latifolia GN=MEN-8 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.494e-20
Identity = 43/80 (53.75%), Postives = 57/80 (71.25%), Query Frame = -2
Query:  203 LIAVAVQTQMTHSQS----CTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSC 430
            L+A+A+  Q+  S++    C S+L NLN CAPYVVPG   T PS +CCAAL  V+ DC CNT+R+A++LPS CNL  L+C
Sbjct:   19 LVALAILVQLKGSEAQAGGCASQLGNLNVCAPYVVPGAVNTNPSQECCAALSGVNHDCMCNTLRVASQLPSSCNLAALNC 98          
BLAST of CN181567 vs. ExPASy Swiss-Prot
Match: 108_SOLLC (Protein 108 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.494e-20
Identity = 43/80 (53.75%), Postives = 62/80 (77.50%), Query Frame = -2
Query:  200 LIAVAVQTQMTH---SQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSCT 430
            L+ + +Q+Q+      QSCT+ LT LN CAP++VPG  + T S++CC A+QS++ DC CNT+RIAA++P+QCNLPPLSC+
Sbjct:   23 LLVIVLQSQVIECQPQQSCTASLTGLNVCAPFLVPG--SPTASTECCNAVQSINHDCMCNTMRIAAQIPAQCNLPPLSCS 100          
BLAST of CN181567 vs. ExPASy Swiss-Prot
Match: LIM3_LILLO (Protein LIM3 OS=Lilium longiflorum GN=LIM3 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.416e-15
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = -2
Query:  203 LIAVAVQTQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSC 430
            L+ +A Q+++  +Q+C++ +  L SC PYV+PG    TPS+ CC+A+Q+V+  C C T+ I + LP  C+LPP+SC
Sbjct:   13 LVVLATQSEIGLAQNCSAAIGGLMSCGPYVLPG-NQLTPSTQCCSAIQAVNHGCLCETINIISSLPGHCSLPPVSC 87          
BLAST of CN181567 vs. ExPASy Swiss-Prot
Match: A9_BRANA (Tapetum-specific protein A9 OS=Brassica napus GN=A9 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.489e-14
Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = -2
Query:  203 MTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSC 403
            M  +Q C   L+N+  CAP V+PG     P+S+CC ALQ+ ++DC CN +R A    + CNLP L C
Sbjct:   26 MVRAQQCLDNLSNMQVCAPLVLPGAVNPAPNSNCCIALQATNKDCICNALRAATTFTTTCNLPSLDC 92          
BLAST of CN181567 vs. ExPASy Swiss-Prot
Match: A9_ARATH (Tapetum-specific protein A9 OS=Arabidopsis thaliana GN=A9 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.015e-13
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = -2
Query:  203 LIAVAVQTQMTH-SQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSC 430
            L+A+ + T  T  +Q C  EL+N+  CAP ++PG      +S+CCAALQ+ ++DC CN +R A  L S CNLP   C
Sbjct:   11 LVAMFLATGPTVLAQQCRDELSNVQVCAPLLLPGAVNPAANSNCCAALQATNKDCLCNALRAATTLTSLCNLPSFDC 87          
BLAST of CN181567 vs. ExPASy Swiss-Prot
Match: M7_LILHE (Protein M7 OS=Lilium henryi GN=M7 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.241e-11
Identity = 27/64 (42.19%), Postives = 43/64 (67.19%), Query Frame = -2
Query:  203 SQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSC 394
            SQ+C++ +  L +C PYV+PG +   PS  CC+AL++V+  C C T+ I + LP  C+LP ++C
Sbjct:   25 SQNCSAAIGELMTCGPYVLPG-SNGAPSEQCCSALKAVNHGCLCETINIISSLPDHCSLPAVNC 87          
BLAST of CN181567 vs. ExPASy Swiss-Prot
Match: LIM2_LILLO (Protein LIM2 OS=Lilium longiflorum GN=LIM2 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.241e-11
Identity = 28/76 (36.84%), Postives = 48/76 (63.16%), Query Frame = -2
Query:  203 LIAVAVQTQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSC 430
            ++ +A  ++   SQ+C++ +  L +C PYV+PG     PS  CC+AL++V+  C C T+ I + LP  C+LP ++C
Sbjct:   14 VLLLAALSREGRSQNCSAAIGELMTCGPYVLPG-NNGAPSEQCCSALRAVNHGCLCETINIISSLPDHCSLPAVNC 88          
BLAST of CN181567 vs. ExPASy Swiss-Prot
Match: LIM1_LILLO (Protein LIM1 OS=Lilium longiflorum GN=LIM1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.241e-11
Identity = 28/76 (36.84%), Postives = 48/76 (63.16%), Query Frame = -2
Query:  203 LIAVAVQTQMTHSQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQCNLPPLSC 430
            ++ +A  ++   SQ+C++ +  L +C PYV+PG     PS  CC+AL++V+  C C T+ I + LP  C+LP ++C
Sbjct:   14 VLLLAALSREGRSQNCSAAIGELMTCGPYVLPG-NNGAPSEQCCSALRAVNHGCLCETINIISSLPDHCSLPAVNC 88          
The following BLAST results are available for this feature:
BLAST of CN181567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
FIL1_ANTMA1.196e-2261.84Stamen-specific protein FIL1 OS=Antirrhinum majus ... [more]
MEN8_SILLA2.494e-2053.75Protein MEN-8 OS=Silene latifolia GN=MEN-8 PE=3 SV... [more]
108_SOLLC2.494e-2053.75Protein 108 OS=Solanum lycopersicum PE=2 SV=1[more]
LIM3_LILLO2.416e-1543.42Protein LIM3 OS=Lilium longiflorum GN=LIM3 PE=3 SV... [more]
A9_BRANA3.489e-1444.78Tapetum-specific protein A9 OS=Brassica napus GN=A... [more]
A9_ARATH1.015e-1344.16Tapetum-specific protein A9 OS=Arabidopsis thalian... [more]
M7_LILHE1.241e-1142.19Protein M7 OS=Lilium henryi GN=M7 PE=2 SV=1[more]
LIM2_LILLO1.241e-1136.84Protein LIM2 OS=Lilium longiflorum GN=LIM2 PE=3 SV... [more]
LIM1_LILLO1.241e-1136.84Protein LIM1 OS=Lilium longiflorum GN=LIM1 PE=3 SV... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001C06_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181567 ID=CN181567; Name=CN181567; organism=Citrus sinensis; type=EST; length=431bp
GAGGTTATTATTATTATTATTATTGCTCTTCAATTCATATAACCAAGTAC
TCTGATCTTGACTGACAGTTCAGTCACGTATCAGACTCTTACATAAAACG
CGACATTGAAAATTAAAAAAAAAAAAAAAACCGCCATTTTTTGCTGACAA
CTCTCGCTTGGGCTCCAAGCATTGATTCTTGGCCTGCATCAAATCAAGGA
GTGCAACTGAGAGGTGGGAGATTGCATTGGCTAGGAAGGCGAGCCGCGAT
CCTCACGGTGTTGCAGAAGCAGTCGCGATCCACAGACTGGAGGGCGGCGC
AGCAGTCAGAGGAAGGAGTTGTGGTCGCGACGCCAGGGACCACATACGGG
GCACAGGAGTTGAGGTTGGTTAGCTCAGACGTGCAGCTCTGTGAATGAGT
CATCTGGGTTTGCACTGCTACCGCTATAAGC
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