CN181564

Overview
NameCN181564
Unique NameCN181564
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length566
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2850 contig Csv1_Contig2850:192..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLLC (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 1.591e-66
Identity = 123/133 (92.48%), Postives = 124/133 (93.23%), Query Frame = -1 
Query:  168 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 566
            IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCH V IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTDENLLS IKDGF  GKDLVVSV  AMGEEQINALKDIGPK
Sbjct:   27 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDENLLSLIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159
[Close]
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A2_SOLLC (Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 3.545e-66
Identity = 120/133 (90.23%), Postives = 125/133 (93.98%), Query Frame = -1 
Query:  168 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 566
            IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCH V IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTDENLL Q+KDGF+ GKDLVVSV  AMGEEQINA+KD+G K
Sbjct:   27 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDENLLKQVKDGFQEGKDLVVSVMSAMGEEQINAVKDVGTK 159
[Close]
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 7.898e-66
Identity = 121/133 (90.98%), Postives = 125/133 (93.98%), Query Frame = -1 
Query:  168 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 566
            IRK+GYIVIKGRPCKVVEVSTSKTGKHGHAKCH V IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD++LLSQIKDGF  GKDLVVSV  AMGEEQINALKDIGPK
Sbjct:   27 IRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159
[Close]
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLTU (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 7.898e-66
Identity = 120/133 (90.23%), Postives = 125/133 (93.98%), Query Frame = -1 
Query:  168 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 566
            IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCH V IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTDE+LL Q+KDGF+ GKDLVVSV  AMGEEQINA+KDIG K
Sbjct:   27 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDESLLKQVKDGFQEGKDLVVSVMSAMGEEQINAIKDIGTK 159
[Close]
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 1.759e-65
Identity = 121/133 (90.98%), Postives = 124/133 (93.23%), Query Frame = -1 
Query:  168 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 566
            IRKNGYIVIK RPCKV+EVSTSKTGKHGHAKCH VGIDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTDENLLSQIKDGF  GKDLVVSV  AMGEE+I +LKDIGPK
Sbjct:   27 IRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPK 159
[Close]
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 2.298e-65
Identity = 121/133 (90.98%), Postives = 124/133 (93.23%), Query Frame = -1 
Query:  168 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 566
            IRKNG+IVIKGRPCKVVEVSTSKTGKHGHAKCH V IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+NLL+QIKDGF  GKDLVVSV  AMGEEQI ALKDIGPK
Sbjct:   27 IRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159
[Close]
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A2_MEDSA (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 4.334e-64
Identity = 118/133 (88.72%), Postives = 124/133 (93.23%), Query Frame = -1 
Query:  168 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 566
            IRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCH V IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLT+NG+TKDDL+LPTD++LL+QIKDGF  GKDLVVSV  AMGEEQI ALKDIGPK
Sbjct:   27 IRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDDSLLTQIKDGFADGKDLVVSVMSAMGEEQICALKDIGPK 159
[Close]
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A_MAIZE (Eukaryotic translation initiation factor 5A OS=Zea mays GN=TIF5A PE=1 SV=2)

HSP 1 Score: 242.662 bits (618), Expect = 9.655e-64
Identity = 115/133 (86.47%), Postives = 125/133 (93.98%), Query Frame = -1 
Query:  168 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 566
            +RKNG+IVIK RPCKVVEVSTSKTGKHGHAKCH V IDIFNGKKLEDIVPSSHNCD+PHV RT+YQLIDISEDGFVSLLT +GNTKDDLRLPTDE L++QIK+GFESGKDLVV+VQ AMGEEQI ALKD+GPK
Sbjct:   28 VRKNGFIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDIPHVNRTEYQLIDISEDGFVSLLTSDGNTKDDLRLPTDETLVAQIKEGFESGKDLVVTVQSAMGEEQICALKDVGPK 160
[Close]
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLLC (Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 2.151e-63
Identity = 117/133 (87.97%), Postives = 122/133 (91.73%), Query Frame = -1 
Query:  168 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 566
            IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCH V IDIFN KKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL+Q+K GFE GKDLV+SV  AMGEEQI A+KDIG K
Sbjct:   27 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTK 159
[Close]
BLAST of CN181564 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLTU (Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 2.809e-63
Identity = 117/133 (87.97%), Postives = 123/133 (92.48%), Query Frame = -1 
Query:  168 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHLVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 566
            IRK+GYIVIKGRPCKVVEVSTSKTGKHGHAKCH V IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL+Q+K GFE GKDLV+SV  AMGEEQI A+KDIG K
Sbjct:   27 IRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDALLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTK 159
The following BLAST results are available for this feature:
BLAST of CN181564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
IF5A3_SOLLC1.591e-6692.48Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A2_SOLLC3.545e-6690.23Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A4_SOLTU7.898e-6690.98Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A3_SOLTU7.898e-6690.23Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A_MANES1.759e-6590.98Eukaryotic translation initiation factor 5A OS=Man... [more]
IF5A2_NICPL2.298e-6590.98Eukaryotic translation initiation factor 5A-2 OS=N... [more]
IF5A2_MEDSA4.334e-6488.72Eukaryotic translation initiation factor 5A-2 OS=M... [more]
IF5A_MAIZE9.655e-6486.47Eukaryotic translation initiation factor 5A OS=Zea... [more]
IF5A4_SOLLC2.151e-6387.97Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A1_SOLTU2.809e-6387.97Eukaryotic translation initiation factor 5A-1/2 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001C03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181564 ID=CN181564; Name=CN181564; organism=Citrus sinensis; type=EST; length=566bp
ACAGAATAAAAATACTGTCGATAGAAAACAATTAATAATATGGTAAGAGT
CATTTTATATGAAATGATGGCATTCATCTTGAAACCGGACACCAGTAAAG
CTACACTACTATCCACCTTCCCACAGCTTTCAGCAATCTGCATTCTCGAT
CAAGCAAAAGTCTTTTACTTGGGGCCAATGTCCTTCAGGGCATTGATCTG
CTCCTCTCCCATAGCACACTGAACTGAGACAACCAGATCTTTCCCACTCT
CAAATCCATCCTTGATCTGTGAAAGCAGATTTTCATCAGTTGGAAGTCTC
AGGTCATCCTTGGTATTGCCATTCTCAGTCAGCAGGCTAACAAATCCATC
CTCAGAGATATCAATCAGCTGGTAGTCAGTGCGAGTGACATGAGGAACAT
CACAGTTGTGGGAAGAGGGAACAATATCCTCAAGCTTCTTGCCATTGAAG
ATGTCAATTCCTACCAAGTGACACTTAGCATGACCGTGCTTTCCAGTCTT
GGAAGTTGAAACCTCAACAACCTTGCAAGGACGACCTTTGATGACGATAT
AACCGTTTTTGCGGAT
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