CN181560

Overview
NameCN181560
Unique NameCN181560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181560 vs. ExPASy Swiss-Prot
Match: NUOF1_RHIME (NADH-quinone oxidoreductase subunit F 1 OS=Rhizobium meliloti GN=nuoF1 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.446e-40
Identity = 74/100 (74.00%), Postives = 88/100 (88.00%), Query Frame = -3
Query:  335 VIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEH 634
            VIVMDKSTD++ AI RLS FYKHESCG+CTPCREGTGW+  +MER+  G A+  EIDML +VTKQ+EGHTICALGDAAAWP+QGLI+HFRPE+E+RI E+
Sbjct:  320 VIVMDKSTDIIKAIWRLSAFYKHESCGQCTPCREGTGWMMRVMERMVQGRAQKREIDMLFDVTKQVEGHTICALGDAAAWPIQGLIKHFRPEMEKRIDEY 419          
BLAST of CN181560 vs. ExPASy Swiss-Prot
Match: NUOF_RICM5 (NADH-quinone oxidoreductase subunit F OS=Rickettsia massiliae (strain Mtu5) GN=nuoF PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.888e-40
Identity = 75/101 (74.26%), Postives = 86/101 (85.15%), Query Frame = -3
Query:  332 VIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHA 634
            +IVMDKSTD++ AIARLS FY HESCG+CTPCREGTGW+W +M RL  GNAK  EID L  VTK+IEGHTICALGDAAAWP+QGLIRHFR E+E RIK ++
Sbjct:  319 IIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMWRVMMRLVKGNAKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARIKSYS 419          
BLAST of CN181560 vs. ExPASy Swiss-Prot
Match: NUOF_RICPR (NADH-quinone oxidoreductase subunit F OS=Rickettsia prowazekii GN=nuoF PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.466e-40
Identity = 75/98 (76.53%), Postives = 85/98 (86.73%), Query Frame = -3
Query:  341 VIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIK 634
            +IVMDKSTD++ AIARLS FY HESCG+CTPCREGTGW+W +M RL  GNAK  EID L  VTK+IEGHTICALGDAAAWP+QGLIRHFR E+E+RIK
Sbjct:  319 IIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMWRVMMRLVNGNAKKNEIDTLLNVTKEIEGHTICALGDAAAWPIQGLIRHFRDEIEQRIK 416          
BLAST of CN181560 vs. ExPASy Swiss-Prot
Match: NUOF_RICAH (NADH-quinone oxidoreductase subunit F OS=Rickettsia akari (strain Hartford) GN=nuoF PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.220e-40
Identity = 75/101 (74.26%), Postives = 86/101 (85.15%), Query Frame = -3
Query:  332 VIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHA 634
            +IVMDKSTD++ AIARLS FY HESCG+CTPCREGTGW+W +M RL  GNAK  EID L  VTK+IEGHTICALGDAAAWP+QGLIRHFR E+E RIK ++
Sbjct:  319 IIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMWRVMIRLVKGNAKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEDRIKSYS 419          
BLAST of CN181560 vs. ExPASy Swiss-Prot
Match: NDUV1_DICDI (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Dictyostelium discoideum GN=ndufv1 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.206e-40
Identity = 75/99 (75.76%), Postives = 88/99 (88.89%), Query Frame = -3
Query:  338 VIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKE 634
            VIVM+K TD++ AIARLS FYKHESCG+CTPCREG GWL+ I +RL  GNAK +EID L+E+++QIEGHTICALGDAAAWPVQGLIRHFRPE+E RIK+
Sbjct:  371 VIVMNKETDMIAAIARLSKFYKHESCGQCTPCREGVGWLYDITDRLVTGNAKPDEIDSLEEISRQIEGHTICALGDAAAWPVQGLIRHFRPEIEDRIKQ 469          
BLAST of CN181560 vs. ExPASy Swiss-Prot
Match: NUOF_RHOCA (NADH-quinone oxidoreductase subunit F OS=Rhodobacter capsulatus GN=nuoF PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.493e-40
Identity = 72/98 (73.47%), Postives = 86/98 (87.76%), Query Frame = -3
Query:  341 VIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIK 634
            +IVMD+ TD++ AIARLS F+KHESCG+CTPCREGT W+W +MERL  G A++EEIDML  VTKQ+EGHTICALGDAAAWP+QGLIRH+R E+E RIK
Sbjct:  321 LIVMDQQTDIIKAIARLSKFFKHESCGQCTPCREGTSWMWRVMERLVTGEAEVEEIDMLFSVTKQVEGHTICALGDAAAWPIQGLIRHYREEIEDRIK 418          
BLAST of CN181560 vs. ExPASy Swiss-Prot
Match: NUOF_RICFE (NADH-quinone oxidoreductase subunit F OS=Rickettsia felis GN=nuoF PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.370e-40
Identity = 74/98 (75.51%), Postives = 84/98 (85.71%), Query Frame = -3
Query:  341 VIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIK 634
            +IVMDKSTD++ AIARLS FY HESCG+CTPCREGTGW+W +M RL  GNA+  EID L  VTK+IEGHTICALGDAAAWP+QGLIRHFR E+E RIK
Sbjct:  319 IIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMWRVMMRLVKGNAQKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEERIK 416          
BLAST of CN181560 vs. ExPASy Swiss-Prot
Match: NDUV1_ASPNG (NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial OS=Aspergillus niger GN=NUO51 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.598e-39
Identity = 73/102 (71.57%), Postives = 90/102 (88.24%), Query Frame = -3
Query:  329 VIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHAE 634
            VIVMDKSTD+V AI+RLS FYKHESCG+CTPCREG+ W   +M+R++ G A+  EIDMLQE+TKQ+EGHTICALG+A AWP+QGLIRHFRPELE RI+E+++
Sbjct:  368 VIVMDKSTDIVRAISRLSTFYKHESCGQCTPCREGSKWTMHMMQRMEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIREYSK 469          
BLAST of CN181560 vs. ExPASy Swiss-Prot
Match: NUOF_RICBR (NADH-quinone oxidoreductase subunit F OS=Rickettsia bellii (strain RML369-C) GN=nuoF PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.087e-39
Identity = 73/98 (74.49%), Postives = 85/98 (86.73%), Query Frame = -3
Query:  341 VIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIK 634
            +IVMDKSTD++ AIARLS FY HESCG+CTPCREGTGW+W +M RL  G+AK  EID L EVTK+IEGHTICALGDAAAWP+QGLI+HFR E+E RI+
Sbjct:  320 IIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMWRVMMRLVKGDAKKSEIDQLLEVTKEIEGHTICALGDAAAWPIQGLIKHFRNEIESRIQ 417          
BLAST of CN181560 vs. ExPASy Swiss-Prot
Match: NUOF_RICB8 (NADH-quinone oxidoreductase subunit F OS=Rickettsia bellii (strain OSU 85-389) GN=nuoF PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.087e-39
Identity = 73/98 (74.49%), Postives = 85/98 (86.73%), Query Frame = -3
Query:  341 VIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIK 634
            +IVMDKSTD++ AIARLS FY HESCG+CTPCREGTGW+W +M RL  G+AK  EID L EVTK+IEGHTICALGDAAAWP+QGLI+HFR E+E RI+
Sbjct:  320 IIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMWRVMMRLVKGDAKKSEIDQLLEVTKEIEGHTICALGDAAAWPIQGLIKHFRNEIESRIQ 417          
The following BLAST results are available for this feature:
BLAST of CN181560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
NUOF1_RHIME1.446e-4074.00NADH-quinone oxidoreductase subunit F 1 OS=Rhizobi... [more]
NUOF_RICM51.888e-4074.26NADH-quinone oxidoreductase subunit F OS=Rickettsi... [more]
NUOF_RICPR2.466e-4076.53NADH-quinone oxidoreductase subunit F OS=Rickettsi... [more]
NUOF_RICAH3.220e-4074.26NADH-quinone oxidoreductase subunit F OS=Rickettsi... [more]
NDUV1_DICDI4.206e-4075.76NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NUOF_RHOCA5.493e-4073.47NADH-quinone oxidoreductase subunit F OS=Rhodobact... [more]
NUOF_RICFE9.370e-4075.51NADH-quinone oxidoreductase subunit F OS=Rickettsi... [more]
NDUV1_ASPNG1.598e-3971.57NADH-ubiquinone oxidoreductase 51 kDa subunit, mit... [more]
NUOF_RICBR2.087e-3974.49NADH-quinone oxidoreductase subunit F OS=Rickettsi... [more]
NUOF_RICB82.087e-3974.49NADH-quinone oxidoreductase subunit F OS=Rickettsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001C01_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181560 ID=CN181560; Name=CN181560; organism=Citrus sinensis; type=EST; length=636bp
TCCTCAGATGAGCCAGAATGTCATGTTCAAGAAATACATGAAACAACTTT
TTTAAGTATCCGTGCCCAGCTCATAAAAAAAAAAAAAAAAGGTAGCATCC
ATGCCCAGATACAGAGGATACATACACCATCATTTCTCCAGGACAGTAAA
TGAAGAATCCATAATTCATACAGCTTAAAACAAACCAAATTCTAACAAAA
TCTTCAGATGCTTGAATTACTCCCAATATCTGGGATGCTTTCCTCAGTTT
TATTCCACAATATCGACCATTTGAAGAAAAAAATTACCTGAGAAGAAAAA
TTTAAGCTGTGGCCTCCAGCAGCTCCCTCTCAGCATGCTCTTTGATCCTT
CTCTCAAGCTCAGGCCTAAAATGTCGTATGAGACCCTGAACAGGCCAAGC
AGCTGCATCACCCAGTGCACAGATTGTGTGCCCTTCAATCTGCTTGGTCA
CCTCCTGAAGCATATCAATCTCCTCCAACTTTGCATTTCCAACCTTCAAT
CTTTCCATGATCATCCAAAGCCATCCTGTTCCCTCCCTGCATGGAGTGCA
CCGCCCACAGCTTTCGTGCTTATAGAAGTATGAGAGCCTAGCAATTGCAT
CGACAACATCAGTTGATTTGTCCATGACAATCACAG
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