CN181555

Overview
NameCN181555
Unique NameCN181555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB2_XENLA (RuvB-like 2 OS=Xenopus laevis GN=ruvbl2 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.713e-65
Identity = 135/197 (68.53%), Postives = 152/197 (77.16%), Query Frame = 2
Query:   47 MAELKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRIKXXXXXXXXXXXXXQIDRPATSXXXXXXXXXXXXXXEMETVYDLGGKMIEALGKEKVQSGDVIAIDKVSG 637
            MA  K+ E RD+TRIERIGAHSHIRGLGLD +LE R VS+GMVGQL +R+AAGVIL+MIKEGKIAGRAVLIAGQPGTGKTAIAMGMA++LG +TPF  I+ SEIFSLEMSKTEAL QAFR++IGVRIK             QIDRPAT               EMET+YDLG KMIE+L KEKVQ+GDVI IDK +G
Sbjct:    4 MAATKVPEVRDVTRIERIGAHSHIRGLGLDDALEPRQVSQGMVGQLASRRAAGVILEMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAQALGSDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEVQIDRPATG-TGAKVGKLTLKTTEMETIYDLGTKMIESLTKEKVQAGDVITIDKATG 199          
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB2_DANRE (RuvB-like 2 OS=Danio rerio GN=ruvbl2 PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.230e-64
Identity = 131/198 (66.16%), Postives = 153/198 (77.27%), Query Frame = 2
Query:   44 RMAELKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRIKXXXXXXXXXXXXXQIDRPATSXXXXXXXXXXXXXXEMETVYDLGGKMIEALGKEKVQSGDVIAIDKVSG 637
            ++A  K+ E RD+TRIERIGAHSHIRGLGLD +LE R VS+GMVGQL +R+AAG+IL+MIK+G+IAGRAVLIAGQPGTGKTAIAMG+A+SLG +TPF  ++ SEIFSLEMSKTEAL QAFRKAIGVRIK             QIDRPAT               EMET+YDLG KMIE+L KE+VQ+GDVI IDK +G
Sbjct:    4 QVATTKVPEVRDITRIERIGAHSHIRGLGLDDALEPRQVSQGMVGQLASRRAAGLILEMIKDGQIAGRAVLIAGQPGTGKTAIAMGIAQSLGPDTPFTALAGSEIFSLEMSKTEALSQAFRKAIGVRIKEETEIIEGEVVEIQIDRPATG-TGAKVGKLTLKTTEMETIYDLGTKMIESLSKERVQAGDVITIDKATG 200          
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB2_MOUSE (RuvB-like 2 OS=Mus musculus GN=Ruvbl2 PE=2 SV=3)

HSP 1 Score: 243.432 bits (620), Expect = 7.197e-64
Identity = 131/196 (66.84%), Postives = 150/196 (76.53%), Query Frame = 2
Query:   50 AELKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRIKXXXXXXXXXXXXXQIDRPATSXXXXXXXXXXXXXXEMETVYDLGGKMIEALGKEKVQSGDVIAIDKVSG 637
            A  K+ E RD+TRIERIGAHSHIRGLGLD +LE R  S+GMVGQL AR+AAGV+L+MI+EGKIAGRAVLIAGQPGTGKTAIAMGMA++LG +TPF  I+ SEIFSLEMSKTEAL QAFR++IGVRIK             QIDRPAT               EMET+YDLG KMIE+L K+KVQ+GDVI IDK +G
Sbjct:    6 ATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATG-TGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATG 200          
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB2_HUMAN (RuvB-like 2 OS=Homo sapiens GN=RUVBL2 PE=1 SV=3)

HSP 1 Score: 243.432 bits (620), Expect = 7.197e-64
Identity = 131/196 (66.84%), Postives = 150/196 (76.53%), Query Frame = 2
Query:   50 AELKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRIKXXXXXXXXXXXXXQIDRPATSXXXXXXXXXXXXXXEMETVYDLGGKMIEALGKEKVQSGDVIAIDKVSG 637
            A  K+ E RD+TRIERIGAHSHIRGLGLD +LE R  S+GMVGQL AR+AAGV+L+MI+EGKIAGRAVLIAGQPGTGKTAIAMGMA++LG +TPF  I+ SEIFSLEMSKTEAL QAFR++IGVRIK             QIDRPAT               EMET+YDLG KMIE+L K+KVQ+GDVI IDK +G
Sbjct:    6 ATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATG-TGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATG 200          
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB2_BOVIN (RuvB-like 2 OS=Bos taurus GN=RUVBL2 PE=2 SV=3)

HSP 1 Score: 243.432 bits (620), Expect = 7.197e-64
Identity = 131/196 (66.84%), Postives = 150/196 (76.53%), Query Frame = 2
Query:   50 AELKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRIKXXXXXXXXXXXXXQIDRPATSXXXXXXXXXXXXXXEMETVYDLGGKMIEALGKEKVQSGDVIAIDKVSG 637
            A  K+ E RD+TRIERIGAHSHIRGLGLD +LE R  S+GMVGQL AR+AAGV+L+MI+EGKIAGRAVLIAGQPGTGKTAIAMGMA++LG +TPF  I+ SEIFSLEMSKTEAL QAFR++IGVRIK             QIDRPAT               EMET+YDLG KMIE+L K+KVQ+GDVI IDK +G
Sbjct:    6 ATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATG-TGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATG 200          
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB2_DICDI (RuvB-like helicase 2 OS=Dictyostelium discoideum GN=rvb2 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.039e-62
Identity = 127/193 (65.80%), Postives = 150/193 (77.72%), Query Frame = 2
Query:   59 KLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRIKXXXXXXXXXXXXXQIDRPATSXXXXXXXXXXXXXXEMETVYDLGGKMIEALGKEKVQSGDVIAIDKVSG 637
            K+S+ +DLTRIERIGAHSHIRGLG+D SLE R++S+GMVGQ+ ARKAAG+ILQMIKEGKIAGRA+LI G+PGTGKTAIAMGMA+SLG +TPF  I+ASEIFSLEMSKTEAL QAFR++IGVRIK             QIDRPAT                M+ +YDLG KMI++L KEKVQ+GD+I IDK +G
Sbjct:    5 KISQVKDLTRIERIGAHSHIRGLGIDDSLEPREISQGMVGQVGARKAAGLILQMIKEGKIAGRAILIGGEPGTGKTAIAMGMAQSLGEKTPFTAIAASEIFSLEMSKTEALTQAFRRSIGVRIKEETEVICGEVVDIQIDRPATG-SGAKVGKLTLKTTSMDALYDLGAKMIDSLTKEKVQNGDIIRIDKGTG 196          
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB2_DROPS (RuvB-like helicase 2 OS=Drosophila pseudoobscura pseudoobscura GN=rept PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.404e-59
Identity = 123/197 (62.44%), Postives = 144/197 (73.10%), Query Frame = 2
Query:   47 MAELKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRIKXXXXXXXXXXXXXQIDRPATSXXXXXXXXXXXXXXEMETVYDLGGKMIEALGKEKVQSGDVIAIDKVSG 637
            M E +  E RD+TRIERIGAHSHIRGLGLD  LEAR VS+GMVGQ  AR+AAGV++QM++EGKIAGR +L+AG+P TGKTAIA+GMA++LG ETPF  +S SEI+SLEMSKTEAL QA RK+IGVRIK             QI+RPAT               EMET YDLG K+IE   KEK+Q+GDVI IDK SG
Sbjct:    1 MTEAEKIEVRDITRIERIGAHSHIRGLGLDDVLEARAVSQGMVGQKDARRAAGVVVQMVREGKIAGRCILLAGEPSTGKTAIAVGMAQALGTETPFTSMSGSEIYSLEMSKTEALSQALRKSIGVRIKEETEIIEGEVVEIQIERPATG-TGQKVGKVTLKTTEMETNYDLGNKIIECFMKEKIQAGDVITIDKASG 196          
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB2_DROME (RuvB-like helicase 2 OS=Drosophila melanogaster GN=rept PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.834e-59
Identity = 124/197 (62.94%), Postives = 145/197 (73.60%), Query Frame = 2
Query:   47 MAELKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRIKXXXXXXXXXXXXXQIDRPATSXXXXXXXXXXXXXXEMETVYDLGGKMIEALGKEKVQSGDVIAIDKVSG 637
            MAE +  E RD+TRIERIGAHSHIRGLGLD  LEAR VS+GMVGQ  AR+AAGV++QM++EGKIAGR +L+AG+P TGKTAIA+GMA++LG ETPF  +S SEI+SLEMSKTEAL QA RK+IGVRIK             QI+RPA S              EMET YDLG K+IE   KEK+Q+GDVI IDK SG
Sbjct:    1 MAETEKIEVRDVTRIERIGAHSHIRGLGLDDVLEARLVSQGMVGQKDARRAAGVVVQMVREGKIAGRCILLAGEPSTGKTAIAVGMAQALGTETPFTSMSGSEIYSLEMSKTEALSQALRKSIGVRIKEETEIIEGEVVEIQIERPA-SGTGQKVGKVTLKTTEMETNYDLGNKIIECFMKEKIQAGDVITIDKASG 196          
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB2_AEDAE (RuvB-like helicase 2 OS=Aedes aegypti GN=rept PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 6.970e-59
Identity = 122/197 (61.93%), Postives = 145/197 (73.60%), Query Frame = 2
Query:   47 MAELKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRIKXXXXXXXXXXXXXQIDRPATSXXXXXXXXXXXXXXEMETVYDLGGKMIEALGKEKVQSGDVIAIDKVSG 637
            MAEL   E RD+TRIERIGAHSHIRGLGLD  LEAR VS+GMVGQ  AR+AAG+++Q+++EGKIAGR +L+AG+P TGKTAIA+GMA++LG ETPF  +S SEI+SLEM+KTEAL QA RK+IGVRIK             QIDRPA S              +MET YDLG K+IE   KEK+Q+GDVI IDK SG
Sbjct:    1 MAELDKIEVRDITRIERIGAHSHIRGLGLDDVLEARAVSQGMVGQKDARRAAGLVVQIVREGKIAGRCILLAGEPSTGKTAIAVGMAQALGNETPFTSMSGSEIYSLEMNKTEALSQALRKSIGVRIKEETEIIEGEVVEIQIDRPA-SGTGQKVGKVTIKTTDMETNYDLGNKIIECFMKEKIQAGDVITIDKASG 196          
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB2_USTMA (RuvB-like helicase 2 OS=Ustilago maydis GN=RVB2 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.580e-55
Identity = 111/197 (56.35%), Postives = 142/197 (72.08%), Query Frame = 2
Query:   47 MAELKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRIKXXXXXXXXXXXXXQIDRPATSXXXXXXXXXXXXXXEMETVYDLGGKMIEALGKEKVQSGDVIAIDKVSG 637
            MA++  +    +  +ERIGAHSH++GLGLD  LE R  S+GMVGQ  ARKAAG+I++M+++G+IAGRA+L+ G P TGKTAIAMGMA++LG + PF M+SASE+FSLEMSKTEALMQAFR++IGVRI+             QIDR  T               +MET+Y+LG KMI++L KEKV +GDVIAIDK SG
Sbjct:    1 MAQISTTSEHTIQTLERIGAHSHVKGLGLDDQLEPRPSSQGMVGQRAARKAAGLIVKMVQDGRIAGRAILMVGPPSTGKTAIAMGMAQTLGSDVPFTMLSASEVFSLEMSKTEALMQAFRRSIGVRIREEAEVVEGEVVEIQIDRSLTG--ATKTGKLTIKTTDMETIYELGNKMIDSLQKEKVTAGDVIAIDKASG 195          
The following BLAST results are available for this feature:
BLAST of CN181555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RUVB2_XENLA1.713e-6568.53RuvB-like 2 OS=Xenopus laevis GN=ruvbl2 PE=2 SV=1[more]
RUVB2_DANRE3.230e-6466.16RuvB-like 2 OS=Danio rerio GN=ruvbl2 PE=1 SV=1[more]
RUVB2_MOUSE7.197e-6466.84RuvB-like 2 OS=Mus musculus GN=Ruvbl2 PE=2 SV=3[more]
RUVB2_HUMAN7.197e-6466.84RuvB-like 2 OS=Homo sapiens GN=RUVBL2 PE=1 SV=3[more]
RUVB2_BOVIN7.197e-6466.84RuvB-like 2 OS=Bos taurus GN=RUVBL2 PE=2 SV=3[more]
RUVB2_DICDI1.039e-6265.80RuvB-like helicase 2 OS=Dictyostelium discoideum G... [more]
RUVB2_DROPS1.404e-5962.44RuvB-like helicase 2 OS=Drosophila pseudoobscura p... [more]
RUVB2_DROME1.834e-5962.94RuvB-like helicase 2 OS=Drosophila melanogaster GN... [more]
RUVB2_AEDAE6.970e-5961.93RuvB-like helicase 2 OS=Aedes aegypti GN=rept PE=3... [more]
RUVB2_USTMA3.580e-5556.35RuvB-like helicase 2 OS=Ustilago maydis GN=RVB2 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001B22_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181555 ID=CN181555; Name=CN181555; organism=Citrus sinensis; type=EST; length=637bp
GAGGAAACCCTAAACCACACGCTATCAAACCACAACCATCACCAGAATGG
CGGAGCTAAAGCTATCGGAAAGCCGAGACCTAACACGAATCGAGCGTATA
GGTGCACACTCCCATATTCGTGGTCTTGGTCTAGACTCATCCCTAGAAGC
GCGCGATGTCTCTGAAGGCATGGTGGGTCAGCTCCCCGCCCGTAAGGCCG
CCGGCGTCATACTCCAAATGATCAAAGAAGGAAAAATCGCGGGTCGGGCC
GTCCTCATTGCGGGGCAACCCGGCACTGGTAAAACCGCCATAGCAATGGG
CATGGCGAAGTCTCTCGGCCTTGAAACTCCCTTTGCCATGATCTCCGCCT
CCGAAATTTTCTCCCTCGAAATGTCGAAAACCGAAGCGCTAATGCAAGCC
TTTAGAAAGGCTATTGGCGTGAGAATCAAAGAAGAAGCCGAAGTTATTGA
AGGAGAAGTTGTTGAGGTGCAGATTGACCGCCCTGCAACATCTGGGGCGG
CAGCGAAGACAGGGAAGCTGACACTGAAAACTACGGAGATGGAGACCGTT
TATGACTTGGGAGGGAAGATGATTGAGGCATTGGGTAAGGAGAAGGTGCA
GAGTGGAGATGTGATTGCTATTGATAAGGTTTCGGGG
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