CN181550

Overview
NameCN181550
Unique NameCN181550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig121 contig Csv1_Contig121:416..1165. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181550 vs. ExPASy Swiss-Prot
Match: FRI3_SOYBN (Ferritin-3, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.929e-52
Identity = 102/145 (70.34%), Postives = 115/145 (79.31%), Query Frame = -1
Query:  316 YAYFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHEGDAA 750
            +AYFDRDN+AL+GL                  MEYQN RGGKVKL SI+ P SEFDH EKGDALYAMELALSLEKLTNEKLL+LHSVA +NND Q+A+F+ESEFLGEQVEAI KI++YV+QLR VGKGHG+WHFDQMLLHE   A
Sbjct:  111 FAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIVMPLSEFDHEEKGDALYAMELALSLEKLTNEKLLNLHSVASKNNDVQLADFIESEFLGEQVEAIKKISEYVAQLRRVGKGHGVWHFDQMLLHEEGVA 255          
BLAST of CN181550 vs. ExPASy Swiss-Prot
Match: FRI1_ARATH (Ferritin-1, chloroplastic OS=Arabidopsis thaliana GN=FER1 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.480e-51
Identity = 97/140 (69.29%), Postives = 114/140 (81.43%), Query Frame = -1
Query:  331 YAYFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLH 750
            YAYFDRDN+A++GL                 FMEYQN RGG+VKLH I+ P SEF+HAEKGDALYAMELALSLEKLTNEKLL++H VA  NNDPQ+A+FVESEFLGEQ+EAI KI+ Y++QLRM+GKGHG+WHFDQMLL+
Sbjct:  116 YAYFDRDNVAMKGLAKFFKESSEEERGHAEKFMEYQNQRGGRVKLHPIVSPISEFEHAEKGDALYAMELALSLEKLTNEKLLNVHKVASENNDPQLADFVESEFLGEQIEAIKKISDYITQLRMIGKGHGVWHFDQMLLN 255          
BLAST of CN181550 vs. ExPASy Swiss-Prot
Match: FRI2_VIGUN (Ferritin-2, chloroplastic OS=Vigna unguiculata GN=PFE2 PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 3.239e-51
Identity = 100/142 (70.42%), Postives = 114/142 (80.28%), Query Frame = -1
Query:  325 YAYFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHEG 750
            +AYFDRDN+ALRGL                  MEYQN RGGKVKL SI+ P SEFDHA+KGDAL+AMELALSLEKLTNEKLL LHSVA +N D Q+A+FVESEFLGEQVE+I +I++YV+QLR VGKGHG+WHFDQMLLHEG
Sbjct:  105 FAYFDRDNVALRGLAKFFKESSEEEREHAEKLMEYQNRRGGKVKLQSIVMPLSEFDHADKGDALHAMELALSLEKLTNEKLLHLHSVATKNGDVQLADFVESEFLGEQVESIKRISEYVAQLRRVGKGHGVWHFDQMLLHEG 246          
BLAST of CN181550 vs. ExPASy Swiss-Prot
Match: FRI4_SOYBN (Ferritin-4, chloroplastic OS=Glycine max PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 5.524e-51
Identity = 101/146 (69.18%), Postives = 118/146 (80.82%), Query Frame = -1
Query:  316 YAYFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHE-GDAA 750
            +AYFDRDN+ALRGL                  MEYQN RGGKVKL SI+ P S+FDHA+KGDAL+AMELALSLEKLTNEKLL+LHSVA +N D Q+A+FVE+E+LGEQVEAI +I++YV+QLR VGKGHG+WHFDQMLLHE GDAA
Sbjct:  102 FAYFDRDNVALRGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIVMPLSDFDHADKGDALHAMELALSLEKLTNEKLLNLHSVATKNGDVQLADFVETEYLGEQVEAIKRISEYVAQLRRVGKGHGVWHFDQMLLHEGGDAA 247          
BLAST of CN181550 vs. ExPASy Swiss-Prot
Match: FRI_PHAVU (Ferritin, chloroplastic OS=Phaseolus vulgaris GN=PFE PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.231e-50
Identity = 97/145 (66.90%), Postives = 112/145 (77.24%), Query Frame = -1
Query:  316 YAYFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHEGDAA 750
            +AYFDRDN+AL+G                   M+YQN RGG+V LH I   PSEF+H EKGDALYAMELALSLEKL NEKL S+HSVADRN DPQ+A+F+ESEFL EQVEAI KI++YV+QLRMVGKGHG+WHFDQ LLH+G AA
Sbjct:  110 FAYFDRDNVALKGFARFFKESSEEEREHAEKLMKYQNTRGGRVVLHPIKNVPSEFEHVEKGDALYAMELALSLEKLVNEKLRSVHSVADRNKDPQLADFIESEFLSEQVEAIKKISEYVAQLRMVGKGHGVWHFDQSLLHDGHAA 254          
BLAST of CN181550 vs. ExPASy Swiss-Prot
Match: FRI2_SOYBN (Ferritin-2, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.231e-50
Identity = 96/143 (67.13%), Postives = 115/143 (80.42%), Query Frame = -1
Query:  322 YAYFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHEGD 750
            +AYFDRDNIAL+GL                  ++YQN+RGG+V LH I  PPSEF+H+EKGDALYAMELALSLEKLTNEKLL +HSVA+RNNDPQ A+F+ESEFL EQV++I KIA+YV+QLR+VGKGHG+WHFDQ LLH+ D
Sbjct:  113 FAYFDRDNIALKGLAKFFKESSEEEREHAEQLIKYQNIRGGRVVLHPITSPPSEFEHSEKGDALYAMELALSLEKLTNEKLLHVHSVAERNNDPQXADFIESEFLYEQVKSIKKIAEYVAQLRLVGKGHGVWHFDQKLLHDED 255          
BLAST of CN181550 vs. ExPASy Swiss-Prot
Match: FRI3_VIGUN (Ferritin-3, chloroplastic OS=Vigna unguiculata PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.607e-50
Identity = 96/141 (68.09%), Postives = 113/141 (80.14%), Query Frame = -1
Query:  328 YAYFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHE 750
            +AYFDRDNIAL+GL                  ++YQN+RGG+V LH I  PPSEF+H EKGDALYAMELALSLEKLTNEKLL +HSVADRNND Q+A+F+ESEFL EQVE+I KIA+YV+QLR+VGKGHG+WHFDQ LLH+
Sbjct:  116 FAYFDRDNIALKGLAKFFKESSEEEREHAEKLIKYQNIRGGRVVLHPITSPPSEFEHPEKGDALYAMELALSLEKLTNEKLLYVHSVADRNNDAQLADFIESEFLNEQVESIKKIAEYVTQLRLVGKGHGVWHFDQRLLHD 256          
BLAST of CN181550 vs. ExPASy Swiss-Prot
Match: FRI1_BRANA (Ferritin-1, chloroplastic OS=Brassica napus GN=LSC30 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.099e-50
Identity = 97/140 (69.29%), Postives = 113/140 (80.71%), Query Frame = -1
Query:  331 YAYFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLH 750
            YAYFDRDN+AL+GL                 FMEYQN RGG+V LH I+ P S+F+HAEKGDALYAMELALSLEKLTNEKLL+LH VA  NNDPQ+A+FVESEFLGEQ+EAI KI+ +++QLRMVGKGHG+WHFDQMLL+
Sbjct:  115 YAYFDRDNVALKGLAKFFKESSDEEREHAEKFMEYQNQRGGRVTLHPIVSPISDFEHAEKGDALYAMELALSLEKLTNEKLLNLHRVASENNDPQLADFVESEFLGEQIEAIKKISDFITQLRMVGKGHGVWHFDQMLLN 254          
BLAST of CN181550 vs. ExPASy Swiss-Prot
Match: FRI_MALXI (Ferritin, chloroplastic OS=Malus xiaojinensis PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.504e-48
Identity = 93/139 (66.91%), Postives = 109/139 (78.42%), Query Frame = -1
Query:  334 YAYFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLL 750
            +AYFDRDN+AL+G                   M+YQN RGG+V LH+I   PSEF+H EKGDALYAMELALSLEKL NEKLL++HSVADRNNDPQMA+F+ESEFL EQVE+I KI++YV+QLR VGKGHG+WHFDQ LL
Sbjct:  111 FAYFDRDNVALKGFAKFFKESSEEEREHAEKLMKYQNTRGGRVVLHAIKNVPSEFEHVEKGDALYAMELALSLEKLVNEKLLNVHSVADRNNDPQMADFIESEFLSEQVESIKKISEYVAQLRRVGKGHGVWHFDQRLL 249          
BLAST of CN181550 vs. ExPASy Swiss-Prot
Match: FRI2_TOBAC (Ferritin-2, chloroplastic OS=Nicotiana tabacum GN=FER2 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.965e-48
Identity = 96/141 (68.09%), Postives = 111/141 (78.72%), Query Frame = -1
Query:  328 YAYFDRDNIALRGLXXXXXXXXXXXXXXXXXFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHE 750
            YAYFDRDN+AL+GL                  MEYQN RGGKVKL SI+ P SEFDHAE+GDALYAMELALSL KLTN+KLL+LH+VA RNND Q+A+FVES++L EQVEAI  I++YV+QLR VGKGHG+WHFDQMLL E
Sbjct:  114 YAYFDRDNVALKGLARFFKESSEEERGHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEEGDALYAMELALSLAKLTNQKLLNLHAVATRNNDVQLADFVESKYLREQVEAIKMISEYVAQLRRVGKGHGVWHFDQMLLQE 254          
The following BLAST results are available for this feature:
BLAST of CN181550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
FRI3_SOYBN2.929e-5270.34Ferritin-3, chloroplastic OS=Glycine max PE=2 SV=1[more]
FRI1_ARATH2.480e-5169.29Ferritin-1, chloroplastic OS=Arabidopsis thaliana ... [more]
FRI2_VIGUN3.239e-5170.42Ferritin-2, chloroplastic OS=Vigna unguiculata GN=... [more]
FRI4_SOYBN5.524e-5169.18Ferritin-4, chloroplastic OS=Glycine max PE=1 SV=2[more]
FRI_PHAVU1.231e-5066.90Ferritin, chloroplastic OS=Phaseolus vulgaris GN=P... [more]
FRI2_SOYBN1.231e-5067.13Ferritin-2, chloroplastic OS=Glycine max PE=2 SV=1[more]
FRI3_VIGUN1.607e-5068.09Ferritin-3, chloroplastic OS=Vigna unguiculata PE=... [more]
FRI1_BRANA2.099e-5069.29Ferritin-1, chloroplastic OS=Brassica napus GN=LSC... [more]
FRI_MALXI1.504e-4866.91Ferritin, chloroplastic OS=Malus xiaojinensis PE=3... [more]
FRI2_TOBAC1.965e-4868.09Ferritin-2, chloroplastic OS=Nicotiana tabacum GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001B20_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181550 ID=CN181550; Name=CN181550; organism=Citrus sinensis; type=EST; length=750bp
GAACTTTTATTGAACAACTTAATTATATTTATACAATCAGAAGATGGATT
TGGTGCTCTGCTTAAACTATTAGATCCCTTCACACAGTCTGTTACTAAAT
AAAGAAAAAGCACCATCAAAAAGACTATCTAAATGCGACCACACTAATAT
GATAAAGCAAGGAGGCTATTGAGTATTAACTTTGTAGGACTTAACACTGT
TTCAGCTTATTTTTTGTCAACACACTCAACCTCCTGTGGCAGAGATACTT
CAGAACATTTGGCAGAAAAGAGTTGACTAAAGCACAAAGAAATGTAACAA
TATGGTTCTTCATCATGCAGCATCACCCTCGTGGAGAAGCATTTGATCGA
AGTGCCATAATCCGTGGCCTTTCCCAACCATCCTCAGTTGAGAAACATAT
TTTGCGATCTTGTTAATTGCTTCAACCTGCTCACCCAAAAATTCACTCTC
GACAAACTCTGCCATTTGGGGATCATTGTTTCTATCCGCCACACTGTGCA
GGCTCAGAAGCTTCTCGTTTGTTAGCTTCTCCAGGGACAATGCTAGTTCC
ATTGCATACAAGGCATCCCCTTTCTCCGCATGATCAAACTCCGAAGGGGG
CTGCATTATGGAGTGCAGTTTTACTTTTCCACCGCGCAAGTTCTGATACT
CCATAAACTTCTCAGCATGTTCCCTTTCTTCTTCACTGGACTCCTTGAAA
AATTTGGCAAGGCCTCTCAGAGCAATATTATCCCGATCAAAGTACGCATA
back to top