CN181542

Overview
NameCN181542
Unique NameCN181542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10937 contig Csv1_Contig10937:8..647. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181542 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 1.725e-41
Identity = 79/132 (59.85%), Postives = 99/132 (75.00%), Query Frame = 3
Query:  174 ASSPRTVEEIYKDFCARRAGVVRALTYDVDEFYGLCDPDKENLCLYGHPNESWXXXXXXXXXXXXXXXXXXGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGAR--LNRNERKRLFSLINDQPTVFEVV 563
            A +PRTVEE+++DF  RRAG+++ALT DV EF+ LCDP+KENLCLYGHPNE W                  GINFARDGM  KDWLSLVAVH+D+WLL+VAF+ GAR   ++ +RKRLF+++ND PT+FEVV
Sbjct:    6 AYNPRTVEEVFRDFKGRRAGMIKALTTDVQEFFRLCDPEKENLCLYGHPNEHWEVNLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFNMVNDLPTIFEVV 137          
The following BLAST results are available for this feature:
BLAST of CN181542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH1.725e-4159.85PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001B14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181542 ID=CN181542; Name=CN181542; organism=Citrus sinensis; type=EST; length=640bp
GAGGCTTTCTTCGACATCATCTCGTCTCCTCGACTCGATCTCCATGGTCT
CACCGTACCCTTACTCTAATTCAAATTCCTCCAGTTCGTCCAATTCGCTC
CTCTAATTAAATCCAATTTAATAGAATCTCACTTACTAATTAGATCTCCA
ATATTTGCTTTGCTATGGAAATGGCCTCCAGCCCCCGCACCGTGGAGGAG
ATCTACAAAGATTTCTGCGCTCGTAGAGCCGGCGTTGTTCGCGCTTTAAC
TTACGATGTCGATGAATTTTACGGACTCTGCGATCCAGATAAGGAGAATC
TGTGCTTGTACGGCCATCCTAACGAGTCGTGGGAAGTGACGTTGCCGGCA
GAGGAAGTTCCGCCGGAGCTTCCTGAGCCGGCACTTGGGATTAATTTTGC
GAGAGATGGGATGAACAGGAAGGACTGGCTGTCTTTGGTTGCAGTGCACA
CTGATTCATGGTTGCTTTCAGTGGCTTTTTATCTTGGAGCTCGTCTTAAC
CGCAATGAAAGGAAACGTCTGTTTAGCTTGATCAATGATCAACCTACTGT
GTTTGAAGTTGTAACAGAAAGGAAGCCTATAAAAGATAAACCCAGTGTGG
ATAGTAGCAGCAAATCTCGCGGCAGCACTAAGAGATCAAA
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