CN181539

Overview
NameCN181539
Unique NameCN181539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10867 contig Csv1_Contig10867:408..1052. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181539 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.264e-31
Identity = 70/177 (39.55%), Postives = 90/177 (50.85%), Query Frame = 3
Query:  111 TPVVSGASQGSGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRCLYQVAYGDGSFTVGDLVTETVSFGNSGSVKGIALGCGHDNE-XXXXXXXXXXXXXXXXXXXTKQIKATSLAYCLVDRDSPASGVLEFNSA 638
            TPV +G     GEY   + +GTP   FS ++DTGSD+ W QC PCT+C+ Q  PIF+P+ SSS+S LPC +  C+ L    C  N C Y   YGDGS T G + TET +F  S SV  IA GCG DN+                      Q+     +YC+    S +   L   SA
Sbjct:   87 TPVYAG----DGEYLMNVAIGTPDSSFSAIMDTGSDLIWTQCEPCTQCFSQPTPIFNPQDSSSFSTLPCESQYCQDLPSETCNNNECQYTYGYGDGSTTQGYMATETFTFETS-SVPNIAFGCGEDNQGFGQGNGAGLIGMGWGPLSLPSQLGVGQFSYCMTSYGSSSPSTLALGSA 258          
BLAST of CN181539 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.815e-31
Identity = 59/119 (49.58%), Postives = 81/119 (68.07%), Query Frame = 3
Query:  138 GSGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRCLYQVAYGDGSFTVGDLVTETVSFGNSGSVKGIALGCGHDNE 494
            G GEY   + +GTP + FS ++DTGSD+ W QC+PCT+C+ QS PIF+P+ SSS+S LPC++  C++L    C  N C Y   YGDGS T G + TET++FG S S+  I  GCG +N+
Sbjct:   91 GDGEYLMNLSIGTPAQPFSAIMDTGSDLIWTQCQPCTQCFNQSTPIFNPQGSSSFSTLPCSSQLCQALSSPTCSNNFCQYTYGYGDGSETQGSMGTETLTFG-SVSIPNITFGCGENNQ 208          
BLAST of CN181539 vs. ExPASy Swiss-Prot
Match: NEP1_NEPDI (Aspartic proteinase nepenthesin-1 (Fragments) OS=Nepenthes distillatoria PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.716e-12
Identity = 45/115 (39.13%), Postives = 59/115 (51.30%), Query Frame = 3
Query:  138 GSGEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRCLYQVAYGDGSFTVGDLVTETVSFGNSGSVKGIALGCG 482
            G GEY   + +GTP + FS ++DTGSD+ W Q +P T+ + QS    DP+ SSS+S LPC                       YGD S T G + TET +FG S S+  I  G G
Sbjct:   13 GDGEYLMXLSIGTPAQPFSAIMDTGSDLIWTQXQPXTQXFXQS----DPQGSSSFSTLPC----------------------GYGD-SETQGSMGTETFTFG-SVSIPNITFGXG 99          
BLAST of CN181539 vs. ExPASy Swiss-Prot
Match: ASPL2_ARATH (Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.112e-11
Identity = 39/129 (30.23%), Postives = 69/129 (53.49%), Query Frame = 3
Query:  144 GEYFSRIGVGTPPRQFSMVLDTGSDINWLQCRPCTECYQQSD-----PIFDPKTSSSYSPLPCAAPQCKSLDVS-ACR-ANRCLYQVAYGDGSFTVGDLVTETVSFGN-SGSVK------GIALGCGHD 488
            G YF++I +G+PP+++ + +DTGSDI W+ C+PC +C  +++      +FD   SS+   + C    C  +  S +C+ A  C Y + Y D S + G  + + ++    +G +K       +  GCG D
Sbjct:   72 GLYFTKIKLGSPPKEYHVQVDTGSDILWINCKPCPKCPTKTNLNFRLSLFDMNASSTSKKVGCDDDFCSFISQSDSCQPALGCSYHIVYADESTSDGKFIRDMLTLEQVTGDLKTGPLGQEVVFGCGSD 200          
BLAST of CN181539 vs. ExPASy Swiss-Prot
Match: NEP2_NEPDI (Aspartic proteinase nepenthesin-2 (Fragments) OS=Nepenthes distillatoria PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.416e-11
Identity = 36/89 (40.45%), Postives = 44/89 (49.44%), Query Frame = 3
Query:  216 DINWLQCRPCTECYQQSDPIFDPKTSSSYSPLPCAAPQCKSLDVSACRANRCLYQVAYGDGSFTVGDLVTETVSFGNSGSVKGIALGCG 482
            D+ W QC PCT+C+ Q         SSS+S LPC +  C+ L    C    C Y   YGDGS T G +  E     +  SV  IA GCG
Sbjct:   20 DLIWTQCEPCTQCFSQD--------SSSFSTLPCESQYCQDLPSETC---DCQYTYGYGDGSSTQGYMAXE-----DGSSVPNIAFGCG 92          
The following BLAST results are available for this feature:
BLAST of CN181539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
NEP2_NEPGR1.264e-3139.55Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
NEP1_NEPGR2.815e-3149.58Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
NEP1_NEPDI1.716e-1239.13Aspartic proteinase nepenthesin-1 (Fragments) OS=N... [more]
ASPL2_ARATH1.112e-1130.23Aspartic proteinase-like protein 2 OS=Arabidopsis ... [more]
NEP2_NEPDI9.416e-1140.45Aspartic proteinase nepenthesin-2 (Fragments) OS=N... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001B13_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181539 ID=CN181539; Name=CN181539; organism=Citrus sinensis; type=EST; length=645bp
GGGATCACCCGAGTCACACTCTTATCACGAAACTCCAGCTGGCTCTCTAA
ACGTAGACAGACACGAGCTCAAGCCCGCCGAGGCACTTTATCTTGCCGGA
GGATTTCTCCACTCCGGTCGTGTCCGGTGCCAGCCAGGGCAGCGGCGAAT
ACTTCTCCCGAATTGGCGTCGGTACGCCGCCGAGACAGTTCTCTATGGTG
CTCGACACCGGCAGTGACATTAACTGGCTTCAGTGCCGGCCTTGTACCGA
GTGTTATCAACAATCCGATCCGATTTTTGACCCAAAAACGTCATCGTCTT
ACAGTCCTCTCCCGTGTGCCGCTCCTCAGTGTAAATCCCTCGACGTGTCC
GCTTGTCGTGCGAACAGGTGCCTCTACCAAGTGGCGTACGGTGATGGGTC
TTTTACCGTGGGTGATTTGGTGACTGAAACGGTGTCGTTTGGAAACAGCG
GGAGCGTGAAGGGTATCGCTTTGGGTTGCGGTCATGATAATGAAGGGCTC
TTTGTTGGATCTGCCGGCTTGCTTGGACTTGGGGGTGGCATGCTCTCTCT
TACTAAGCAAATTAAAGCGACGTCATTGGCTTACTGCTTGGTGGACCGTG
ACTCTCCCGCCTCTGGTGTTCTCGAGTTCAACTCGGCACGAGGCG
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