CN181536

Overview
NameCN181536
Unique NameCN181536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181536 vs. ExPASy Swiss-Prot
Match: RS8_MAIZE (40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 4.148e-42
Identity = 84/112 (75.00%), Postives = 92/112 (82.14%), Query Frame = -3
Query:  199 LSIDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXKEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQR 534
            + +DAAPFKQWYL HYGVDIGR            EG+E +A A EE KKS+HV RKLEKR++ RTLDPHIEEQFGSGRLLACI+SRPGQCGRADGYILEGKELEFYMKKLQR
Sbjct:  103 VQVDAAPFKQWYLTHYGVDIGRKKKTPAAKKDNAEGQEVEA-AAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 213          
BLAST of CN181536 vs. ExPASy Swiss-Prot
Match: RS8_ORYSJ (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 3.511e-41
Identity = 84/112 (75.00%), Postives = 93/112 (83.04%), Query Frame = -3
Query:  199 LSIDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXKEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQR 534
            + +DAAPFKQWYL HYGVDIGR            EG++ +A  TEEAKKS+HV+RKLEKRQ+ RTLD HIEEQFGSGRLLACI+SRPGQCGRADGYILEGKELEFYMKKLQR
Sbjct:  103 VQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDA-EGQDAEA-TTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 212          
BLAST of CN181536 vs. ExPASy Swiss-Prot
Match: RS8_PRUAR (40S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.095e-38
Identity = 80/112 (71.43%), Postives = 89/112 (79.46%), Query Frame = -3
Query:  199 LSIDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXKEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQR 534
            + +DAAPFKQWYLQHYGV+IGR            E  EG+A  TEEAKKS+HV  KLEKRQ+ RTLD HIEEQFG G+LLACI+SRPGQCG+ADG ILEGKELEFYMKKLQR
Sbjct:  103 VQVDAAPFKQWYLQHYGVEIGRKKKTAAAKKDTPE--EGEA-TTEEAKKSNHVAIKLEKRQQGRTLDAHIEEQFGGGKLLACISSRPGQCGKADGDILEGKELEFYMKKLQR 211          
BLAST of CN181536 vs. ExPASy Swiss-Prot
Match: RS82_ARATH (40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.803e-37
Identity = 78/112 (69.64%), Postives = 87/112 (77.68%), Query Frame = -3
Query:  199 LSIDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXKEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQR 534
            + +DAAPFKQ YLQHYGVDIGR              ++G+A  TEE KKS+HV RKLE RQ+ R LD H+EEQF SGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ+
Sbjct:  103 VQVDAAPFKQGYLQHYGVDIGRK-------------KKGEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQK 201          
BLAST of CN181536 vs. ExPASy Swiss-Prot
Match: RS81_ARATH (40S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.076e-37
Identity = 74/113 (65.49%), Postives = 87/113 (76.99%), Query Frame = -3
Query:  199 LSIDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXKE-GEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQR 534
            + +DAAPFKQWYL HYGV++GR            E GEE    A EE KKS+H+LRK+  RQ+ R+LD HIE+QF SGRLLACI+SRPGQCGRADGYILEGKELEFYMKK+Q+
Sbjct:  103 VQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQK 215          
BLAST of CN181536 vs. ExPASy Swiss-Prot
Match: RS8_ICTPU (40S ribosomal protein S8 OS=Ictalurus punctatus GN=rps8 PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.135e-23
Identity = 53/109 (48.62%), Postives = 74/109 (67.89%), Query Frame = -3
Query:  202 IDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXKEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ 528
            +D+APF+QWY  HY + +GR              EE D    + +KK   V +K +KR+K+  + P ++EQF  G+LLACI+SRPGQCGRADGY+LEGKELEFY++K++
Sbjct:  104 VDSAPFRQWYESHYALPLGRKKGAKLTP------EEEDILNKKRSKK---VQKKFDKRRKNSKISPLLDEQFQQGKLLACISSRPGQCGRADGYVLEGKELEFYLRKIK 203          
BLAST of CN181536 vs. ExPASy Swiss-Prot
Match: RS8_DROME (40S ribosomal protein S8 OS=Drosophila melanogaster GN=RpS8 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.356e-23
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = -3
Query:  202 IDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXKEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ 528
            IDA PF+QWY  HY + +GR              ++ D       K+S  V++K  +RQK   ++  +E+QF SGR+LACI+SRPGQCGR+DGYILEGKELEFY+KK++
Sbjct:  104 IDATPFRQWYEAHYVLPLGRKRNPK-------HAQKEDENDVLTKKRSEKVMKKYLERQKYGKVEQALEDQFTSGRILACISSRPGQCGRSDGYILEGKELEFYLKKIK 205          
BLAST of CN181536 vs. ExPASy Swiss-Prot
Match: RS8_XENLA (40S ribosomal protein S8 OS=Xenopus laevis GN=rps8 PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 9.607e-23
Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = -3
Query:  202 LSIDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXKEGEEGDAPATEEA---KKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ 534
            L +D+ PF+QW+  HY + +GR                   P  EE    K+S    +K E+R+K   + P +EEQF  G+LLACIASRPGQCGRADGY+LEGKELEFY++K++
Sbjct:  102 LLVDSTPFRQWFEAHYALPLGRKKGAKL------------TPEEEEILNKKRSKKTQKKYEERKKTAKISPLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 203          
BLAST of CN181536 vs. ExPASy Swiss-Prot
Match: RS8_DICDI (40S ribosomal protein S8 OS=Dictyostelium discoideum GN=rps8 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.795e-22
Identity = 54/112 (48.21%), Postives = 67/112 (59.82%), Query Frame = -3
Query:  199 LSIDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXKEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQR 534
            + IDA P+KQWY  HYGV +G+            +  + D  A +  KKS+ +L KL  R K R LD  IE Q G GR  A I SRPGQ G+ DGYILE KELEFY ++LQ+
Sbjct:  106 VQIDATPYKQWYETHYGVVVGKK-----------KSAKKDGEAEQVVKKSASLLAKLASRAKGRVLDSAIESQIGEGRFFARITSRPGQVGKCDGYILEAKELEFYQRRLQK 206          
BLAST of CN181536 vs. ExPASy Swiss-Prot
Match: RS8_RAT (40S ribosomal protein S8 OS=Rattus norvegicus GN=Rps8 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 3.651e-22
Identity = 51/112 (45.54%), Postives = 71/112 (63.39%), Query Frame = -3
Query:  202 IDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXKEGEEGDAPATEEA---KKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ 528
            ID+ P++QWY  HY + +GR                   P  EE    K+S  + +K ++R+K+  +   +EEQF  G+LLACIASRPGQCGRADGY+LEGKELEFY++K++
Sbjct:  104 IDSTPYRQWYESHYALPLGRKKGAKL------------TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 203          
The following BLAST results are available for this feature:
BLAST of CN181536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS8_MAIZE4.148e-4275.0040S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 ... [more]
RS8_ORYSJ3.511e-4175.0040S ribosomal protein S8 OS=Oryza sativa subsp. ja... [more]
RS8_PRUAR8.095e-3871.4340S ribosomal protein S8 OS=Prunus armeniaca GN=RP... [more]
RS82_ARATH1.803e-3769.6440S ribosomal protein S8-2 OS=Arabidopsis thaliana... [more]
RS81_ARATH3.076e-3765.4940S ribosomal protein S8-1 OS=Arabidopsis thaliana... [more]
RS8_ICTPU1.135e-2348.6240S ribosomal protein S8 OS=Ictalurus punctatus GN... [more]
RS8_DROME7.356e-2348.6240S ribosomal protein S8 OS=Drosophila melanogaste... [more]
RS8_XENLA9.607e-2346.4940S ribosomal protein S8 OS=Xenopus laevis GN=rps8... [more]
RS8_DICDI2.795e-2248.2140S ribosomal protein S8 OS=Dictyostelium discoide... [more]
RS8_RAT3.651e-2245.5440S ribosomal protein S8 OS=Rattus norvegicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001B11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181536 ID=CN181536; Name=CN181536; organism=Citrus sinensis; type=EST; length=608bp
GAGGCAGGCACTGGTAATATTCAAAACAAAATATAACAGTAACACAAGTT
CGAAATACAAGTTCAACTGCTGATATCATCTCAACTCTCCAAGTTTTAAC
TTGAGACTAAAAACAAGAACACAAGACAAAACTAGAAATTCCAGTACGGA
GTTTCAATAAACAAAAATTTAAGCAGCACCAGCACCCTTGCCCTTCTTCC
TCTGTAACTTCTTCATGTAGAATTCCAGCTCTTTACCCTCCAAGATGTAT
CCATCAGCACGTCCACACTGGCCGGGCCGTGATGCGATACAAGCTAACAA
ACGACCACTACCAAACTGCTCCTCAATATGTGGGTCAAGTGTGCGATCTT
TTTGACGCTTCTCAAGCTTTCTCAAGACATGGCTGCTCTTCTTTGCCTCC
TCAGTGGCAGGAGCGTCTCCTTCCTCTCCTTCTTTCTTGGTTGTGGCAGC
AGCTGCAGCCTTCTTCTTGCGACCAATGTCAACACCATAATGCTGGAGAT
ACCACTGCTTGAATGGTGCTGCATCAATAGACAATCAGATGAGACACCTA
GTCTATCTCATAGAGAATGCTATCCTAAACCTTCCAGAGGGTCAGGAACA
AATGGCAT
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