CN181535
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN181535 vs. ExPASy Swiss-Prot
Match: RS8_MAIZE (40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2) HSP 1 Score: 171.014 bits (432), Expect = 4.675e-42 Identity = 84/112 (75.00%), Postives = 92/112 (82.14%), Query Frame = 3 Query: 117 LSIDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQR 452 + +DAAPFKQWYL HYGVDIGR EG+E +A A EE KKS+HV RKLEKR++ RTLDPHIEEQFGSGRLLACI+SRPGQCGRADGYILEGKELEFYMKKLQR Sbjct: 103 VQVDAAPFKQWYLTHYGVDIGRKKKTPAAKKDNAEGQEVEA-AAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 213
BLAST of CN181535 vs. ExPASy Swiss-Prot
Match: RS8_ORYSJ (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2) HSP 1 Score: 167.933 bits (424), Expect = 3.958e-41 Identity = 84/112 (75.00%), Postives = 93/112 (83.04%), Query Frame = 3 Query: 117 LSIDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQR 452 + +DAAPFKQWYL HYGVDIGR EG++ +A TEEAKKS+HV+RKLEKRQ+ RTLD HIEEQFGSGRLLACI+SRPGQCGRADGYILEGKELEFYMKKLQR Sbjct: 103 VQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDA-EGQDAEA-TTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 212
BLAST of CN181535 vs. ExPASy Swiss-Prot
Match: RS8_PRUAR (40S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 9.124e-38 Identity = 80/112 (71.43%), Postives = 89/112 (79.46%), Query Frame = 3 Query: 117 LSIDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQR 452 + +DAAPFKQWYLQHYGV+IGR E EG+A TEEAKKS+HV KLEKRQ+ RTLD HIEEQFG G+LLACI+SRPGQCG+ADG ILEGKELEFYMKKLQR Sbjct: 103 VQVDAAPFKQWYLQHYGVEIGRKKKTAAAKKDTPE--EGEA-TTEEAKKSNHVAIKLEKRQQGRTLDAHIEEQFGGGKLLACISSRPGQCGKADGDILEGKELEFYMKKLQR 211
BLAST of CN181535 vs. ExPASy Swiss-Prot
Match: RS82_ARATH (40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 2.033e-37 Identity = 78/112 (69.64%), Postives = 87/112 (77.68%), Query Frame = 3 Query: 117 LSIDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQR 452 + +DAAPFKQ YLQHYGVDIGR ++G+A TEE KKS+HV RKLE RQ+ R LD H+EEQF SGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ+ Sbjct: 103 VQVDAAPFKQGYLQHYGVDIGRK-------------KKGEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQK 201
BLAST of CN181535 vs. ExPASy Swiss-Prot
Match: RS81_ARATH (40S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 3.467e-37 Identity = 74/113 (65.49%), Postives = 87/113 (76.99%), Query Frame = 3 Query: 117 LSIDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXE-GEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQR 452 + +DAAPFKQWYL HYGV++GR E GEE A EE KKS+H+LRK+ RQ+ R+LD HIE+QF SGRLLACI+SRPGQCGRADGYILEGKELEFYMKK+Q+ Sbjct: 103 VQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQK 215
BLAST of CN181535 vs. ExPASy Swiss-Prot
Match: RS8_ICTPU (40S ribosomal protein S8 OS=Ictalurus punctatus GN=rps8 PE=2 SV=3) HSP 1 Score: 109.768 bits (273), Expect = 1.279e-23 Identity = 53/109 (48.62%), Postives = 74/109 (67.89%), Query Frame = 3 Query: 123 IDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ 449 +D+APF+QWY HY + +GR EE D + +KK V +K +KR+K+ + P ++EQF G+LLACI+SRPGQCGRADGY+LEGKELEFY++K++ Sbjct: 104 VDSAPFRQWYESHYALPLGRKKGAKLTP------EEEDILNKKRSKK---VQKKFDKRRKNSKISPLLDEQFQQGKLLACISSRPGQCGRADGYVLEGKELEFYLRKIK 203
BLAST of CN181535 vs. ExPASy Swiss-Prot
Match: RS8_DROME (40S ribosomal protein S8 OS=Drosophila melanogaster GN=RpS8 PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 8.291e-23 Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 3 Query: 123 IDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ 449 IDA PF+QWY HY + +GR ++ D K+S V++K +RQK ++ +E+QF SGR+LACI+SRPGQCGR+DGYILEGKELEFY+KK++ Sbjct: 104 IDATPFRQWYEAHYVLPLGRKRNPK-------HAQKEDENDVLTKKRSEKVMKKYLERQKYGKVEQALEDQFTSGRILACISSRPGQCGRSDGYILEGKELEFYLKKIK 205
BLAST of CN181535 vs. ExPASy Swiss-Prot
Match: RS8_XENLA (40S ribosomal protein S8 OS=Xenopus laevis GN=rps8 PE=2 SV=3) HSP 1 Score: 106.686 bits (265), Expect = 1.083e-22 Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = 3 Query: 117 LSIDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEA---KKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ 449 L +D+ PF+QW+ HY + +GR P EE K+S +K E+R+K + P +EEQF G+LLACIASRPGQCGRADGY+LEGKELEFY++K++ Sbjct: 102 LLVDSTPFRQWFEAHYALPLGRKKGAKL------------TPEEEEILNKKRSKKTQKKYEERKKTAKISPLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 203
BLAST of CN181535 vs. ExPASy Swiss-Prot
Match: RS8_DICDI (40S ribosomal protein S8 OS=Dictyostelium discoideum GN=rps8 PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.151e-22 Identity = 54/112 (48.21%), Postives = 67/112 (59.82%), Query Frame = 3 Query: 117 LSIDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQR 452 + IDA P+KQWY HYGV +G+ + + D A + KKS+ +L KL R K R LD IE Q G GR A I SRPGQ G+ DGYILE KELEFY ++LQ+ Sbjct: 106 VQIDATPYKQWYETHYGVVVGKK-----------KSAKKDGEAEQVVKKSASLLAKLASRAKGRVLDSAIESQIGEGRFFARITSRPGQVGKCDGYILEAKELEFYQRRLQK 206
BLAST of CN181535 vs. ExPASy Swiss-Prot
Match: RS8_RAT (40S ribosomal protein S8 OS=Rattus norvegicus GN=Rps8 PE=1 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 4.115e-22 Identity = 51/112 (45.54%), Postives = 71/112 (63.39%), Query Frame = 3 Query: 123 IDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEA---KKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ 449 ID+ P++QWY HY + +GR P EE K+S + +K ++R+K+ + +EEQF G+LLACIASRPGQCGRADGY+LEGKELEFY++K++ Sbjct: 104 IDSTPYRQWYESHYALPLGRKKGAKL------------TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 203 The following BLAST results are available for this feature:
BLAST of CN181535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 25
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181535 ID=CN181535; Name=CN181535; organism=Citrus sinensis; type=EST; length=649bpback to top |