CN181533
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN181533 vs. ExPASy Swiss-Prot
Match: RNFT2_HUMAN (Ring finger and transmembrane domain-containing protein 2 OS=Homo sapiens GN=RNFT2 PE=2 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 2.101e-24 Identity = 54/140 (38.57%), Postives = 85/140 (60.71%), Query Frame = -3 Query: 364 LYRALLPTPVWYRFFLNKEYGSLF--SSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 777 L+R+L+P +WY++ + + + + ++ LY K + +V ALK L + +YG AT +Q AGD+CAICQ + P++L C+H+FCE+C+ W +RERTCPLCR+ V LR + DG+TS FQ++ Sbjct: 307 LFRSLVPIQLWYKYIMGDDSSNSYFLGGVLIVLYSLCKSFDICGRVGGVRKALKLLCTSQ-NYGVRATGQQCTEAGDICAICQAEFREPLILLCQHVFCEECLCLWLDRERTCPLCRS-VAVDTLRCWKDGATSAHFQVY 444
BLAST of CN181533 vs. ExPASy Swiss-Prot
Match: RNFT2_PONAB (Ring finger and transmembrane domain-containing protein 2 OS=Pongo abelii GN=RNFT2 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.033e-23 Identity = 53/140 (37.86%), Postives = 84/140 (60.00%), Query Frame = -3 Query: 364 LYRALLPTPVWYRFFLNKEYGSLF--SSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 777 L+R+L+P +WY++ + + + + ++ LY K + +V ALK L + +YG AT +Q AGD+CAICQ + P++L C+H+FCE+C+ W +RERTCPL R+ V LR + DG+TS FQ++ Sbjct: 307 LFRSLVPIQLWYKYIMGDDSSNSYFLGGVLIVLYSLCKSFDICGRVGGVRKALKLLCTSQ-NYGVRATGQQCTEAGDICAICQAEFREPLILLCQHVFCEECLCLWLDRERTCPLSRS-VAVDTLRCWKDGATSAHFQVY 444
BLAST of CN181533 vs. ExPASy Swiss-Prot
Match: RNFT1_XENLA (RING finger and transmembrane domain-containing protein 1 OS=Xenopus laevis GN=rnft1 PE=2 SV=2) HSP 1 Score: 107.071 bits (266), Expect = 1.153e-22 Identity = 56/144 (38.89%), Postives = 85/144 (59.03%), Query Frame = -3 Query: 364 YRALLPTPVWYRFFLNKEYGSL-------FSSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 774 Y L+ TPVW+R+ + +YG+L F L+ LYL K+ + + ++ L+ L + +YG AT Q + A +CAICQ + PI L C+H+FCE+C+S WF +E+TCPLCR L+ + + DG+TSL +IF Sbjct: 277 YCTLVSTPVWFRYLI--DYGNLDSGAEWHFGILLALLYLILKILIIFGQRKTSSDCLR-LFLSQPNYGTTATKRQCSEADGMCAICQAEFTKPIALICQHVFCEECISSWFNKEKTCPLCRTLI-SNHSHKWKDGATSLQLRIF 416
BLAST of CN181533 vs. ExPASy Swiss-Prot
Match: RNFT2_MOUSE (Ring finger and transmembrane domain-containing protein 2 OS=Mus musculus GN=Rnft2 PE=2 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 1.505e-22 Identity = 52/140 (37.14%), Postives = 83/140 (59.29%), Query Frame = -3 Query: 364 LYRALLPTPVWYRFFLNKEYGSLF--SSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 777 L+R+L+P +WY++ + + + + ++ LY K + +V ALK L + +YG AT +Q AG +CAICQ + P++L C+H+FCE+C+ W +RERTCPLCR+ V LR + DG+TS Q++ Sbjct: 308 LFRSLVPIQLWYKYIMGDDSSNSYFLGGVLIVLYSLCKSFDICGRVGGLRKALKLLCTSQ-NYGVRATGQQCTEAGAVCAICQAEFRDPMILLCQHVFCEECLCLWLDRERTCPLCRS-VAVDTLRCWKDGATSAHLQVY 445
BLAST of CN181533 vs. ExPASy Swiss-Prot
Match: RNFT1_HUMAN (RING finger and transmembrane domain-containing protein 1 OS=Homo sapiens GN=RNFT1 PE=2 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 1.966e-22 Identity = 53/142 (37.32%), Postives = 84/142 (59.15%), Query Frame = -3 Query: 364 YRALLPTPVWYRFFLNK-EYGSL----FSSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 774 YR +P PVW+R+ ++ E+G++ L+ LYL KL +++F L+ + YG A+ Q + D+C+ICQ + PILL C+HIFCE+C++ WF RE+TCPLCR ++ + + + DG+TS QI+ Sbjct: 296 YRTFVPIPVWFRYLISYGEFGNVTRWSLGILLALLYLILKLLEFFGHLRTFRQVLRIFFTQP-SYGVAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVI-SDHINKWKDGATSSHLQIY 435
BLAST of CN181533 vs. ExPASy Swiss-Prot
Match: RNFT1_XENTR (RING finger and transmembrane domain-containing protein 1 OS=Xenopus tropicalis GN=rnft1 PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 9.757e-22 Identity = 55/144 (38.19%), Postives = 87/144 (60.42%), Query Frame = -3 Query: 364 YRALLPTPVWYRFFLNKEYGSL-------FSSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 774 Y L+ TPVW+R+ + +YG+ F L+ LYL KL + + ++ ++L+ L + +YGA AT Q + +CAICQ + PI+L C+H+FCE+C+S WF +E+TCPLCR ++ + + DG+TSL +IF Sbjct: 277 YCMLVSTPVWFRYLI--DYGNQNSGAEWHFGILLALLYLILKLLIIFGQRKTSSNSLR-LFLTQPNYGAAATKSQCSEVDGMCAICQAEFIKPIVLVCQHVFCEECISLWFNKEKTCPLCRTVI-SNQSHKWKDGATSLQLRIF 416
BLAST of CN181533 vs. ExPASy Swiss-Prot
Match: RNFT1_DANRE (RING finger and transmembrane domain-containing protein 1 OS=Danio rerio GN=rnft1 PE=2 SV=2) HSP 1 Score: 103.99 bits (258), Expect = 9.757e-22 Identity = 52/143 (36.36%), Postives = 81/143 (56.64%), Query Frame = -3 Query: 364 LYRALLPTPVWYRFFLNKE-----YGSLFSSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 777 LY+ + P P+W+R+ ++ + G L+ LYL KL ++ S L+ EV+ GA A+ Q+ AGD+C ICQ P +L C+HIFCE+C+++W +ERTCPLCR ++ + + DG+TS QI+ Sbjct: 279 LYQVIAPVPLWFRYLVSYDEMDTSVGLTLGILLALLYLIMKLLALYGLSGSLQKTLRTFFSPEVN-GAPASPAQIREAGDICPICQADFKQPRVLVCQHIFCEECIAQWLNQERTCPLCRTVI-TDKVHKWKDGATSAHLQIY 419
BLAST of CN181533 vs. ExPASy Swiss-Prot
Match: RNFT1_MOUSE (RING finger and transmembrane domain-containing protein 1 OS=Mus musculus GN=Rnft1 PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.839e-21 Identity = 50/142 (35.21%), Postives = 81/142 (57.04%), Query Frame = -3 Query: 364 YRALLPTPVWYRFFLNK-EYGSL----FSSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 774 YR +P PVW+R+ ++ E+G++ L+ LYL KL +++F L+ + YG A+ Q + +C ICQ + P+LL C+HIFCE+C++ WF RE+TCPLCR ++ + + DG+TS Q++ Sbjct: 256 YRIFVPIPVWFRYLISYGEFGNVTTWSLGILLALLYLILKLLDFFGHLRTFRQVLRVFFTRP-SYGVPASKRQCSDMDGICTICQAEFQKPVLLFCQHIFCEECITLWFNREKTCPLCRTVISEC-INKWKDGATSSHLQMY 395 The following BLAST results are available for this feature:
BLAST of CN181533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN181533 ID=CN181533; Name=CN181533; organism=Citrus sinensis; type=EST; length=782bpback to top |