CN181533

Overview
NameCN181533
Unique NameCN181533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13076 contig Csv1_Contig13076:226..1007. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181533 vs. ExPASy Swiss-Prot
Match: RNFT2_HUMAN (Ring finger and transmembrane domain-containing protein 2 OS=Homo sapiens GN=RNFT2 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.101e-24
Identity = 54/140 (38.57%), Postives = 85/140 (60.71%), Query Frame = -3
Query:  364 LYRALLPTPVWYRFFLNKEYGSLF--SSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 777
            L+R+L+P  +WY++ +  +  + +    ++  LY   K   +  +V     ALK L   + +YG  AT +Q   AGD+CAICQ +   P++L C+H+FCE+C+  W +RERTCPLCR+ V    LR + DG+TS  FQ++
Sbjct:  307 LFRSLVPIQLWYKYIMGDDSSNSYFLGGVLIVLYSLCKSFDICGRVGGVRKALKLLCTSQ-NYGVRATGQQCTEAGDICAICQAEFREPLILLCQHVFCEECLCLWLDRERTCPLCRS-VAVDTLRCWKDGATSAHFQVY 444          
BLAST of CN181533 vs. ExPASy Swiss-Prot
Match: RNFT2_PONAB (Ring finger and transmembrane domain-containing protein 2 OS=Pongo abelii GN=RNFT2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.033e-23
Identity = 53/140 (37.86%), Postives = 84/140 (60.00%), Query Frame = -3
Query:  364 LYRALLPTPVWYRFFLNKEYGSLF--SSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 777
            L+R+L+P  +WY++ +  +  + +    ++  LY   K   +  +V     ALK L   + +YG  AT +Q   AGD+CAICQ +   P++L C+H+FCE+C+  W +RERTCPL R+ V    LR + DG+TS  FQ++
Sbjct:  307 LFRSLVPIQLWYKYIMGDDSSNSYFLGGVLIVLYSLCKSFDICGRVGGVRKALKLLCTSQ-NYGVRATGQQCTEAGDICAICQAEFREPLILLCQHVFCEECLCLWLDRERTCPLSRS-VAVDTLRCWKDGATSAHFQVY 444          
BLAST of CN181533 vs. ExPASy Swiss-Prot
Match: RNFT1_XENLA (RING finger and transmembrane domain-containing protein 1 OS=Xenopus laevis GN=rnft1 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.153e-22
Identity = 56/144 (38.89%), Postives = 85/144 (59.03%), Query Frame = -3
Query:  364 YRALLPTPVWYRFFLNKEYGSL-------FSSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 774
            Y  L+ TPVW+R+ +  +YG+L       F  L+  LYL  K+  +  + ++    L+ L   + +YG  AT  Q + A  +CAICQ +   PI L C+H+FCE+C+S WF +E+TCPLCR L+ +     + DG+TSL  +IF
Sbjct:  277 YCTLVSTPVWFRYLI--DYGNLDSGAEWHFGILLALLYLILKILIIFGQRKTSSDCLR-LFLSQPNYGTTATKRQCSEADGMCAICQAEFTKPIALICQHVFCEECISSWFNKEKTCPLCRTLI-SNHSHKWKDGATSLQLRIF 416          
BLAST of CN181533 vs. ExPASy Swiss-Prot
Match: RNFT2_MOUSE (Ring finger and transmembrane domain-containing protein 2 OS=Mus musculus GN=Rnft2 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.505e-22
Identity = 52/140 (37.14%), Postives = 83/140 (59.29%), Query Frame = -3
Query:  364 LYRALLPTPVWYRFFLNKEYGSLF--SSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 777
            L+R+L+P  +WY++ +  +  + +    ++  LY   K   +  +V     ALK L   + +YG  AT +Q   AG +CAICQ +   P++L C+H+FCE+C+  W +RERTCPLCR+ V    LR + DG+TS   Q++
Sbjct:  308 LFRSLVPIQLWYKYIMGDDSSNSYFLGGVLIVLYSLCKSFDICGRVGGLRKALKLLCTSQ-NYGVRATGQQCTEAGAVCAICQAEFRDPMILLCQHVFCEECLCLWLDRERTCPLCRS-VAVDTLRCWKDGATSAHLQVY 445          
BLAST of CN181533 vs. ExPASy Swiss-Prot
Match: RNFT1_HUMAN (RING finger and transmembrane domain-containing protein 1 OS=Homo sapiens GN=RNFT1 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.966e-22
Identity = 53/142 (37.32%), Postives = 84/142 (59.15%), Query Frame = -3
Query:  364 YRALLPTPVWYRFFLNK-EYGSL----FSSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 774
            YR  +P PVW+R+ ++  E+G++       L+  LYL  KL      +++F   L+    +   YG  A+  Q +   D+C+ICQ +   PILL C+HIFCE+C++ WF RE+TCPLCR ++ +  +  + DG+TS   QI+
Sbjct:  296 YRTFVPIPVWFRYLISYGEFGNVTRWSLGILLALLYLILKLLEFFGHLRTFRQVLRIFFTQP-SYGVAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVI-SDHINKWKDGATSSHLQIY 435          
BLAST of CN181533 vs. ExPASy Swiss-Prot
Match: RNFT1_XENTR (RING finger and transmembrane domain-containing protein 1 OS=Xenopus tropicalis GN=rnft1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.757e-22
Identity = 55/144 (38.19%), Postives = 87/144 (60.42%), Query Frame = -3
Query:  364 YRALLPTPVWYRFFLNKEYGSL-------FSSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 774
            Y  L+ TPVW+R+ +  +YG+        F  L+  LYL  KL  +  + ++  ++L+ L   + +YGA AT  Q +    +CAICQ +   PI+L C+H+FCE+C+S WF +E+TCPLCR ++ +     + DG+TSL  +IF
Sbjct:  277 YCMLVSTPVWFRYLI--DYGNQNSGAEWHFGILLALLYLILKLLIIFGQRKTSSNSLR-LFLTQPNYGAAATKSQCSEVDGMCAICQAEFIKPIVLVCQHVFCEECISLWFNKEKTCPLCRTVI-SNQSHKWKDGATSLQLRIF 416          
BLAST of CN181533 vs. ExPASy Swiss-Prot
Match: RNFT1_DANRE (RING finger and transmembrane domain-containing protein 1 OS=Danio rerio GN=rnft1 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 9.757e-22
Identity = 52/143 (36.36%), Postives = 81/143 (56.64%), Query Frame = -3
Query:  364 LYRALLPTPVWYRFFLNKE-----YGSLFSSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 777
            LY+ + P P+W+R+ ++ +      G     L+  LYL  KL ++     S    L+     EV+ GA A+  Q+  AGD+C ICQ     P +L C+HIFCE+C+++W  +ERTCPLCR ++    +  + DG+TS   QI+
Sbjct:  279 LYQVIAPVPLWFRYLVSYDEMDTSVGLTLGILLALLYLIMKLLALYGLSGSLQKTLRTFFSPEVN-GAPASPAQIREAGDICPICQADFKQPRVLVCQHIFCEECIAQWLNQERTCPLCRTVI-TDKVHKWKDGATSAHLQIY 419          
BLAST of CN181533 vs. ExPASy Swiss-Prot
Match: RNFT1_MOUSE (RING finger and transmembrane domain-containing protein 1 OS=Mus musculus GN=Rnft1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.839e-21
Identity = 50/142 (35.21%), Postives = 81/142 (57.04%), Query Frame = -3
Query:  364 YRALLPTPVWYRFFLNK-EYGSL----FSSLMTGLYLTFKLTSVVEKVQSFFSALKALSRKEVHYGAYATTEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRSFGDGSTSLFFQIF 774
            YR  +P PVW+R+ ++  E+G++       L+  LYL  KL      +++F   L+    +   YG  A+  Q +    +C ICQ +   P+LL C+HIFCE+C++ WF RE+TCPLCR ++    +  + DG+TS   Q++
Sbjct:  256 YRIFVPIPVWFRYLISYGEFGNVTTWSLGILLALLYLILKLLDFFGHLRTFRQVLRVFFTRP-SYGVPASKRQCSDMDGICTICQAEFQKPVLLFCQHIFCEECITLWFNREKTCPLCRTVISEC-INKWKDGATSSHLQMY 395          
The following BLAST results are available for this feature:
BLAST of CN181533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RNFT2_HUMAN2.101e-2438.57Ring finger and transmembrane domain-containing pr... [more]
RNFT2_PONAB3.033e-2337.86Ring finger and transmembrane domain-containing pr... [more]
RNFT1_XENLA1.153e-2238.89RING finger and transmembrane domain-containing pr... [more]
RNFT2_MOUSE1.505e-2237.14Ring finger and transmembrane domain-containing pr... [more]
RNFT1_HUMAN1.966e-2237.32RING finger and transmembrane domain-containing pr... [more]
RNFT1_XENTR9.757e-2238.19RING finger and transmembrane domain-containing pr... [more]
RNFT1_DANRE9.757e-2236.36RING finger and transmembrane domain-containing pr... [more]
RNFT1_MOUSE2.839e-2135.21RING finger and transmembrane domain-containing pr... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001B10_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181533 ID=CN181533; Name=CN181533; organism=Citrus sinensis; type=EST; length=782bp
CTTTTTTTGCGAGAAACGGGAAAAGGATGCTTTCTATTTAGGTGCTTTTC
ATTTATGAAAAATTAACATTGACATATATTGTTAGTCTTGGGGGGAAAAA
ATTCCTGTAACTTAATGGCCTCATTACATACATTCAACATCTTTGCCATC
ATTGAAGAAATTTGACAATACAACATATACTAACGGAAAGCCAATTTGAT
TCTATCCATCATTTTGCTTTAATTTCCTCGGCAACTCATGAACAGGGTTG
AGTAGGATACAGTCAAATTTACTAGTGTAGACGGCAATCTGGAGAAGGCA
GCTTCAATTAAATATCTAGATCTTCAAAGCAAAAAACTCCGGGTTTCTAC
AGTAGTGCAATCAGAATATCTGGAAAAACAAACTAGTTGATCCATCACCA
AATGATCTGAGATCTGCTGCCTTGACCAAAGCTCTGCACAATGGGCACGT
CCTTTCCCTCTCAAACCACTCTGAGACACAGTCTTCGCAGAAAATGTGTT
TACAACGAAGCAGAATTGGAGCATGCATCTTCTCCTGACATATAGCACAC
AAATCTCCAGCTGCATTCACCTGCTCTGTTGTTGCATAGGCCCCATAATG
CACCTCTTTACGCGACAATGCCTTCAACGCAGAAAAGAAGGATTGCACCT
TCTCAACCACAGATGTAAGCTTGAAAGTTAAGTACAGCCCTGTCATCAGC
GATGAGAAGAGACTCCCATATTCTTTGTTCAAGAAGAAACGATACCATAC
TGGTGTTGGCAATAACGCACGGTACAGAAGCA
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