CN181527

Overview
NameCN181527
Unique NameCN181527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13760 contig Csv1_Contig13760:1087..1835. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181527 vs. ExPASy Swiss-Prot
Match: SUI1_SPOST (Protein translation factor SUI1 homolog OS=Sporobolus stapfianus PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.012e-47
Identity = 95/115 (82.61%), Postives = 100/115 (86.96%), Query Frame = -3
Query:  308 MSDFDIQVXXXXXXXXXAKAEDSGA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 646
            MSD DIQ+         A A DSGA  GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:    1 MSDLDIQIPTAFDPFSEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CN181527 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSJ (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.012e-47
Identity = 95/115 (82.61%), Postives = 100/115 (86.96%), Query Frame = -3
Query:  308 MSDFDIQVXXXXXXXXXAKAEDSGA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 646
            MSD DIQ+         A A DSGA  GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CN181527 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSI (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica GN=GOS2 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.012e-47
Identity = 95/115 (82.61%), Postives = 100/115 (86.96%), Query Frame = -3
Query:  308 MSDFDIQVXXXXXXXXXAKAEDSGA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 646
            MSD DIQ+         A A DSGA  GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CN181527 vs. ExPASy Swiss-Prot
Match: SUI1_SALBA (Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.044e-46
Identity = 91/113 (80.53%), Postives = 101/113 (89.38%), Query Frame = -3
Query:  308 MSDFDIQVXXXXXXXXXAKAEDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 646
            MS+FD  +         A AEDSGAG+K+YVH+RVQQRNGRKSLTTVQGLKK++SYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS+FLVQAGIVKKE+IK+HGF
Sbjct:    1 MSEFDNAIPTAFDPFAEANAEDSGAGTKDYVHVRVQQRNGRKSLTTVQGLKKDYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSSFLVQAGIVKKENIKIHGF 113          
BLAST of CN181527 vs. ExPASy Swiss-Prot
Match: SUI1_MAIZE (Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.044e-46
Identity = 94/115 (81.74%), Postives = 100/115 (86.96%), Query Frame = -3
Query:  308 MSDFDIQVXXXXXXXXXAKAEDSGA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 646
            MSD DIQ+         A A DSGA  GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSY+KILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYSKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CN181527 vs. ExPASy Swiss-Prot
Match: SUI12_ARATH (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.044e-46
Identity = 92/113 (81.42%), Postives = 101/113 (89.38%), Query Frame = -3
Query:  308 MSDFDIQVXXXXXXXXXAKAEDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 646
            MSD ++QV         A AEDSGAG+KEYVHIRVQQRNGRKSLTTVQGLKKE+SY+KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK++IK+HGF
Sbjct:    1 MSDLEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of CN181527 vs. ExPASy Swiss-Prot
Match: SUI11_ARATH (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.511e-45
Identity = 92/113 (81.42%), Postives = 99/113 (87.61%), Query Frame = -3
Query:  308 MSDFDIQVXXXXXXXXXAKAEDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 646
            MS+ D QV         A AEDSGAG+KEYVHIRVQQRNGRKSLTTVQGLKKE+SY KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK++IK+HGF
Sbjct:    1 MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of CN181527 vs. ExPASy Swiss-Prot
Match: SUI1_BRAOL (Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.499e-45
Identity = 91/113 (80.53%), Postives = 98/113 (86.73%), Query Frame = -3
Query:  308 MSDFDIQVXXXXXXXXXAKAEDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 646
            MS+ D QV         A AEDSGAG+KEYVHIRVQQRNGRKSLTTVQGLKKE+SY KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+ I++HGF
Sbjct:    1 MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDDIQIHGF 113          
BLAST of CN181527 vs. ExPASy Swiss-Prot
Match: SUI1_PIMBR (Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.789e-38
Identity = 80/113 (70.80%), Postives = 90/113 (79.65%), Query Frame = -3
Query:  308 MSDFDIQVXXXXXXXXXAKAEDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 646
            M D DIQ+         A+  D+   +KEYVHIR+QQRNGRKSLTTVQGLKKE SY+KILKDLKK  CCNGTVV D ELG+VIQLQGDQRKNVSTF+VQAGIVKK+ IK+H F
Sbjct:    1 MVDSDIQIPTSFDPFAEAEITDATGSTKEYVHIRIQQRNGRKSLTTVQGLKKELSYDKILKDLKKALCCNGTVVNDKELGKVIQLQGDQRKNVSTFIVQAGIVKKDQIKVHNF 113          
BLAST of CN181527 vs. ExPASy Swiss-Prot
Match: EIF1B_PIG (Eukaryotic translation initiation factor 1b OS=Sus scrofa GN=EIF1B PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.285e-28
Identity = 54/89 (60.67%), Postives = 75/89 (84.27%), Query Frame = -3
Query:  308 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 574
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
The following BLAST results are available for this feature:
BLAST of CN181527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI1_SPOST8.012e-4782.61Protein translation factor SUI1 homolog OS=Sporobo... [more]
SUI1_ORYSJ8.012e-4782.61Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_ORYSI8.012e-4782.61Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_SALBA3.044e-4680.53Protein translation factor SUI1 homolog OS=Salix b... [more]
SUI1_MAIZE3.044e-4681.74Protein translation factor SUI1 homolog OS=Zea may... [more]
SUI12_ARATH3.044e-4681.42Protein translation factor SUI1 homolog 2 OS=Arabi... [more]
SUI11_ARATH1.511e-4581.42Protein translation factor SUI1 homolog 1 OS=Arabi... [more]
SUI1_BRAOL7.499e-4580.53Protein translation factor SUI1 homolog OS=Brassic... [more]
SUI1_PIMBR1.789e-3870.80Protein translation factor SUI1 homolog OS=Pimpine... [more]
EIF1B_PIG1.285e-2860.67Eukaryotic translation initiation factor 1b OS=Sus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001B07_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181527 ID=CN181527; Name=CN181527; organism=Citrus sinensis; type=EST; length=741bp
CTTTTTTTATCCTTCTANACCCATTAAATTAGATGATAACTTTGGATAAC
CATTTGTACTTACAACATACGAGCAAACTATACTGCATCACATAACCATA
ATCATCCCACATTACATAAAACCGAGAACTAGGAAACATCAGTGGCACAA
AAACAGATAAAACAATACTAAACCAACACAGGAGATGATATAACAGCACC
ACCACATACAAATTTTTTTTTTTTTAATAGTATCAATAGCATGTTCTGCA
CTGCACTGACGAACGCGGGTCACCAAATGTGCAGAAACGGAAGTTGCTGT
TTACTTAAAAGCCATGCATTTTGATATGTTCCTTCTTCACAATCCCAGCC
TGAACAAGGAACGTAGATACATTCTTCCGCTGGTCACCTTGGAGTTGAAT
GACCTGTCCTAGTTCAGGATCCTGGACCACTGTTCCATTGCAGCAAAATT
CCTTTTTGAGGTCCTTGAGGATTTTGTTGTAACTAAATTCTTTCTTCAAC
CCCTGGACAGTTGTCAGGCTTTTCCTACCATTCCGTTGCTGAACACGGAT
ATGCACATACTCTTTTGAACCAGCACCTGAGTCCTCAGCCTTTGCATCAG
CAAACGGGTCAAAGGCAGCAGGAACCTGGATATCAAAATCAGACATGAAC
CTCAGCTGATGCAAGGGGCCCAACAACCGGAATGCTCAGACCTGATCCGA
AGATTAGGGTTTAATAATCGAGATAGTCCGATCTGATAAGA
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