CN188592

Overview
NameCN188592
Unique NameCN188592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2675 contig Csv1_Contig2675:1..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN188592 vs. ExPASy Swiss-Prot
Match: CAES_ARATH (Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana GN=At4g34215 PE=1 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 4.933e-71
Identity = 137/206 (66.50%), Postives = 153/206 (74.27%), Query Frame = 1 
Query:   58 PTQIFILSGQSNMAGRGGVTKHHH-----WDGVVPHECQPHPSILRFSAELHWEPAREPLHADIDTKKACGVGPGMSFANAVVARAEGER--VGLVPCAVGGTAIKEWARGEELYESMVARSKESVNKSGGRIKALLWYQGESDASTDHDAEAYQQNMEAFISNVREDLELPSLPIIQVALASGDKYKEKSREAQLGINLQNVVCV 654
            P QIFILSGQSNMAGRGGV K HH     WD ++P EC P+ SILR SA+L WE A EPLH DIDT K CGVGPGM+FANAV  R E +   +GLVPCA GGTAIKEW RG  LYE MV R++ES  K GG IKA+LWYQGESD    HDAE+Y  NM+  I N+R DL LPSLPIIQVA+ASG  Y +K REAQLG+ L NVVCV
Sbjct:   21 PNQIFILSGQSNMAGRGGVFKDHHNNRWVWDKILPPECAPNSSILRLSADLRWEEAHEPLHVDIDTGKVCGVGPGMAFANAVKNRLETDSAVIGLVPCASGGTAIKEWERGSHLYERMVKRTEES-RKCGGEIKAVLWYQGESDVLDIHDAESYGNNMDRLIKNLRHDLNLPSLPIIQVAIASGGGYIDKVREAQLGLKLSNVVCV 225
The following BLAST results are available for this feature:
BLAST of CN188592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CAES_ARATH4.933e-7166.50Probable carbohydrate esterase At4g34215 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006G02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188592 ID=CN188592; Name=CN188592; organism=Citrus sinensis; type=EST; length=654bp
CTTAAAAAGTAAAATATGGAAGCTCCCAACCCGGACCCCCTTTCAAACAT
CCAAAACCCGACCCAGATTTTCATCCTATCTGGGCAGAGCAACATGGCAG
GCCGAGGCGGTGTAACCAAGCACCACCACTGGGACGGGGTAGTCCCGCAC
GAGTGCCAACCTCACCCCTCCATTCTCCGCTTCAGCGCCGAGCTCCACTG
GGAGCCGGCGCGTGAGCCTCTCCACGCGGACATCGACACCAAGAAGGCCT
GCGGCGTGGGGCCCGGGATGTCTTTCGCCAATGCGGTCGTTGCGCGTGCG
GAGGGGGAGCGAGTGGGGCTGGTGCCGTGTGCGGTGGGGGGAACTGCCAT
CAAAGAGTGGGCCCGTGGAGAGGAGTTGTACGAGAGTATGGTGGCGAGGA
GTAAAGAGAGTGTGAACAAGAGCGGCGGACGGATTAAGGCTTTGTTGTGG
TACCAAGGGGAGAGTGACGCGTCGACGGATCACGATGCCGAGGCTTACCA
GCAGAACATGGAGGCATTCATTAGTAATGTCAGGGAAGATCTTGAGTTGC
CTTCACTCCCTATAATTCAGGTAGCGCTTGCTTCAGGAGATAAGTACAAA
GAGAAAAGTAGGGAAGCGCAACTGGGGATCAATCTTCAAAATGTTGTGTG
TGTC
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