CN188588

Overview
NameCN188588
Unique NameCN188588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig878 contig Csv1_Contig878:59..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN188588 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.050e-29
Identity = 62/148 (41.89%), Postives = 94/148 (63.51%), Query Frame = 2 
Query:   26 MLAVFDKSVAKAPEALQSPQT--ESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLA 463
            MLAVF++S+ + P  L  PQ   +   A     +A  F +    S   +L +   +A+S   +NPL PR   V+DD+FC+F G ++N   L++ YGL++ A E +I++EAY+ LRDR PYP DQV+++++GKFAFIL+DS +   FLA
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CN188588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC7.050e-2941.89Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188588 ID=CN188588; Name=CN188588; organism=Citrus sinensis; type=EST; length=709bp
ATTTAACGATCGTGAGGGAGAGAAAATGCTGGCAGTGTTTGACAAATCGG
TGGCCAAAGCCCCAGAGGCTCTGCAGAGTCCACAGACCGAGTCTGCTTGC
GCGCTGAAGAATGGTCTATTGGCTAACCACTTTAGCTCTGTTCACCCTGG
CTCTGTCACTGTGAATCTTGGCTCTTCTGGCGTCATTGCTTACTCCCTTA
ACAGGCAAAATCCTCTTTTGCCAAGATTATTTGCGGTTGTGGATGACATT
TTCTGCTTGTTCCAAGGCCACATTGAGAACGTTGCTCTGCTTAAGCAGCA
ATATGGACTAAACAAAACAGCAAATGAGGTCATCATTGTCATTGAGGCTT
ACAGAACTCTCAGGGATCGAGGTCCTTATCCTGCCGATCAGGTTGTCAGA
GACATTCAAGGGAAGTTTGCATTTATTCTCTATGACAGCTCTTCGAAAAA
CGCATTCTTAGCTTCTGATGCTGATGGGAGTGTTCCCTTCTTCTGGGGTA
CTGATTCTGAAGGCCATCTTGTTCTTTCCGATGATGTAGAGATTGTGAAG
AAGGGCTGTGGGAAGTCTTTTGCACCATTCCCTAAAGCATGCTTCTTTAC
ATCTTCTGGTGGATTGAGGAGCTTCGAGCACCCCATGAATGAGCTGAAGC
CTGTGCCAAGGGTAGATAGTTCAGGTCAGGTTTGTGGTTCAACTTTCAAG
GTGGATGCT
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