CN188576

Overview
NameCN188576
Unique NameCN188576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2621 contig Csv1_Contig2621:11..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDX1_HEVBR (Probable pyridoxal biosynthesis protein PDX1 OS=Hevea brasiliensis GN=PDX1 PE=2 SV=1)

HSP 1 Score: 383.645 bits (984), Expect = 4.970e-106
Identity = 195/201 (97.01%), Postives = 199/201 (99.00%), Query Frame = 3
Query:   75 YGNDGAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            YGN GAITETKKSPFSVKVGLAQMLRGGVIMDVV PEQAR+AEEAGACAVMALERVPADIR+QGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGN+IEAVRHVRSVMGDIR+LRNMDDDEVFTFAKKIAAPY
Sbjct:   10 YGN-GAITETKKSPFSVKVGLAQMLRGGVIMDVVNPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNVIEAVRHVRSVMGDIRLLRNMDDDEVFTFAKKIAAPY 209          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDX13_ARATH (Pyridoxal biosynthesis protein PDX1.3 OS=Arabidopsis thaliana GN=PDX13 PE=1 SV=2)

HSP 1 Score: 367.466 bits (942), Expect = 3.685e-101
Identity = 187/201 (93.03%), Postives = 195/201 (97.01%), Query Frame = 3
Query:   75 YGNDGAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            YGN GAITE KKSPFSVKVGLAQMLRGGVIMDVV  EQAR+AEEAGACAVMALERVPADIR+QGGVARMSDPQ+IKEIKQ+VTIPVMAKARIGHFVEAQILEAIGIDY+DESEVLT ADE++HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSV GDIRVLRNMDDDEVFTFAKK+AAPY
Sbjct:   10 YGN-GAITEAKKSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQMIKEIKQAVTIPVMAKARIGHFVEAQILEAIGIDYIDESEVLTLADEDHHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVNGDIRVLRNMDDDEVFTFAKKLAAPY 209          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDX1_PHAVU (Pyridoxal biosynthesis protein PDX1 OS=Phaseolus vulgaris GN=PDX1 PE=2 SV=1)

HSP 1 Score: 366.696 bits (940), Expect = 6.287e-101
Identity = 186/201 (92.54%), Postives = 193/201 (96.02%), Query Frame = 3
Query:   75 YGNDGAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            Y  +GAITETKKSPFSVKVGLAQMLRGGVIMDVV  +QAR+AEEAGACAVMALERVPADIR+QGGVARMSDPQLIKEIK++VTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLT AD+ NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVM DIRVLRNMDDDEVFTFAK IAAPY
Sbjct:   12 YDGNGAITETKKSPFSVKVGLAQMLRGGVIMDVVNADQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKEIKRAVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTLADDANHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMSDIRVLRNMDDDEVFTFAKSIAAPY 212          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDX11_ARATH (Pyridoxal biosynthesis protein PDX1.1 OS=Arabidopsis thaliana GN=PDX11 PE=1 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.227e-96
Identity = 179/202 (88.61%), Postives = 194/202 (96.04%), Query Frame = 3
Query:   75 YGNDGAITETK-KSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            YG +GA+TETK KSPFSVKVGLAQMLRGGVIMDVV  EQAR+AEEAGACAVMALERVPADIR+QGGVARMSDP++IKEIK +VTIPVMAKARIGHFVEAQILEAIG+DYVDESEVLT ADE+NHINKHNF+IPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGN++EAVRHVRSV G IR+LR+MDDDEVFT+AKKIAAPY
Sbjct:   10 YG-EGAMTETKQKSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPEMIKEIKNAVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTLADEDNHINKHNFKIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNVVEAVRHVRSVNGAIRLLRSMDDDEVFTYAKKIAAPY 210          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDX1_GINBI (Probable pyridoxal biosynthesis protein PDX1 OS=Ginkgo biloba GN=PDX1 PE=2 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 7.443e-94
Identity = 174/201 (86.57%), Postives = 189/201 (94.03%), Query Frame = 3
Query:   75 YGNDGAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            YG DGAIT+TK S ++VKVGLAQMLRGGVIMDVV  EQAR+AEEAGA AVMALERVPADIR+QGGVARMSDP LIKEIK +VTIPVMAKARIGHFVEAQILEAIGIDY+DESEVLTPAD+ +HINKHNFRIPFVCGCRNLGEALRRI EGAAMIRTKGEAGTGN+IEAVRHVRSV+GDIR L+++DDDEVF FAK+IAAPY
Sbjct:   10 YG-DGAITDTKVSSYAVKVGLAQMLRGGVIMDVVNAEQARIAEEAGATAVMALERVPADIRAQGGVARMSDPGLIKEIKSAVTIPVMAKARIGHFVEAQILEAIGIDYIDESEVLTPADDXHHINKHNFRIPFVCGCRNLGEALRRIAEGAAMIRTKGEAGTGNVIEAVRHVRSVLGDIRKLQSLDDDEVFAFAKQIAAPY 209          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDX11_ORYSJ (Probable pyridoxal biosynthesis protein PDX1.1 OS=Oryza sativa subsp. japonica GN=PDX11 PE=2 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 2.828e-93
Identity = 168/191 (87.96%), Postives = 185/191 (96.86%), Query Frame = 3
Query:  105 KKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            K + FSVKVGLAQMLRGGVIMDVVTPEQAR+AEEAGACAVMALERVPADIR+QGGVARMSDP LI++IK++VTIPVMAKARIGHFVEAQILEAIG+DYVDESEVLT AD+ +HINKHNFR+PFVCGCR+LGEALRRIREGAAMIRTKGEAGTGN++EAVRHVRSVMGDIR LRNMDDDEVF++AK+IAAPY
Sbjct:   28 KSATFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPGLIRDIKRAVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTLADDAHHINKHNFRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGNVVEAVRHVRSVMGDIRALRNMDDDEVFSYAKRIAAPY 218          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDX12_ORYSJ (Probable pyridoxal biosynthesis protein PDX1.2 OS=Oryza sativa subsp. japonica GN=PDX12 PE=2 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.188e-91
Identity = 168/201 (83.58%), Postives = 187/201 (93.03%), Query Frame = 3
Query:   75 YGNDGAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            YG    ++  K   FSVKVGLAQMLRGGVIMDVVTPEQAR+AEEAGACAVMALERVPADIR+QGGVARMSDP LI++IK+SVTIPVMAKARIGH VEAQILEAIG+DYVDESEVLT AD+ +HINK+NFR+PFVCGCR+LGEALRRIREGAAMIRTKGEAGTGN++EAVRHVRSVMGDIR LR+MDDDEVF++AK+IAAPY
Sbjct:   12 YGGANGLSH-KSGSFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPGLIRDIKRSVTIPVMAKARIGHLVEAQILEAIGVDYVDESEVLTLADDAHHINKNNFRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGNVVEAVRHVRSVMGDIRALRSMDDDEVFSYAKRIAAPY 211          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_CHLAD (Pyridoxal biosynthesis lyase pdxS OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pdxS PE=3 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 3.349e-86
Identity = 154/191 (80.63%), Postives = 179/191 (93.72%), Query Frame = 3
Query:  105 KKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            +KS ++ KVGLAQML+GGVIMDVVTPEQAR+AEEAGA AVMALERVPADIR+QGGVARMSDP+LI  IKQ+VTIPVMAKARIGHFVEAQ+LEAIG+DY+DESEVLTPADEE+HINKH FR+PFVCGCRNLGEALRRI EGAAM+RTKGEAGTGN++EAVRH R+V  +IR L++M++DE+FT+AK+I APY
Sbjct:    2 EKSTWTTKVGLAQMLKGGVIMDVVTPEQARIAEEAGAVAVMALERVPADIRAQGGVARMSDPELILAIKQAVTIPVMAKARIGHFVEAQVLEAIGVDYIDESEVLTPADEEHHINKHKFRVPFVCGCRNLGEALRRIAEGAAMLRTKGEAGTGNVVEAVRHARAVYSEIRRLQSMNEDELFTYAKQIQAPY 192          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_ROSS1 (Pyridoxal biosynthesis lyase pdxS OS=Roseiflexus sp. (strain RS-1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 4.374e-86
Identity = 154/190 (81.05%), Postives = 177/190 (93.16%), Query Frame = 3
Query:  108 KSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            KS ++ KVGLAQML+GGVIMDVVTPEQAR+AEEAGA AVMALERVPADIR+QGGVARMSDP+LI  IK++VTIPVMAKARIGHFVEAQILEA+GIDY+DESEVLTPADEE+HINKH FR+PFVCGCRNLGEALRR+ EGAAM+RTKGEAGTGN++EAVRH R+V  +IR L++MD+DE+FT+AK I APY
Sbjct:    3 KSTWTTKVGLAQMLKGGVIMDVVTPEQARIAEEAGAVAVMALERVPADIRAQGGVARMSDPELILAIKEAVTIPVMAKARIGHFVEAQILEALGIDYIDESEVLTPADEEHHINKHKFRVPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARAVYSEIRRLQSMDEDELFTYAKNIQAPY 192          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_CHLSY (Pyridoxal biosynthesis lyase pdxS OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=pdxS PE=3 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 4.374e-86
Identity = 153/191 (80.10%), Postives = 179/191 (93.72%), Query Frame = 3
Query:  105 KKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            +KS ++ KVGLAQML+GGVIMDVVTPEQAR+AEEAGA AVMALERVPADIR+QGGVARMSDP+LI  IKQ+VTIPVMAKARIGHFVEAQ+LEAIG+DY+DESEVLTPADEE+HINKH FR+PFVCGCRNLGEALRR+ EGAAM+RTKGEAGTGN++EAVRH R+V  +IR L++M++DE+FT+AK+I APY
Sbjct:    2 EKSTWTTKVGLAQMLKGGVIMDVVTPEQARIAEEAGAVAVMALERVPADIRAQGGVARMSDPELILAIKQAVTIPVMAKARIGHFVEAQVLEAIGVDYIDESEVLTPADEEHHINKHKFRVPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARAVYSEIRRLQSMNEDELFTYAKQIQAPY 192          
The following BLAST results are available for this feature:
BLAST of CN188576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDX1_HEVBR4.970e-10697.01Probable pyridoxal biosynthesis protein PDX1 OS=He... [more]
PDX13_ARATH3.685e-10193.03Pyridoxal biosynthesis protein PDX1.3 OS=Arabidops... [more]
PDX1_PHAVU6.287e-10192.54Pyridoxal biosynthesis protein PDX1 OS=Phaseolus v... [more]
PDX11_ARATH1.227e-9688.61Pyridoxal biosynthesis protein PDX1.1 OS=Arabidops... [more]
PDX1_GINBI7.443e-9486.57Probable pyridoxal biosynthesis protein PDX1 OS=Gi... [more]
PDX11_ORYSJ2.828e-9387.96Probable pyridoxal biosynthesis protein PDX1.1 OS=... [more]
PDX12_ORYSJ1.188e-9183.58Probable pyridoxal biosynthesis protein PDX1.2 OS=... [more]
PDXS_CHLAD3.349e-8680.63Pyridoxal biosynthesis lyase pdxS OS=Chloroflexus ... [more]
PDXS_ROSS14.374e-8681.05Pyridoxal biosynthesis lyase pdxS OS=Roseiflexus s... [more]
PDXS_CHLSY4.374e-8680.10Pyridoxal biosynthesis lyase pdxS OS=Chloroflexus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188576 ID=CN188576; Name=CN188576; organism=Citrus sinensis; type=EST; length=677bp
GCGGTTCTCTTCCTTCGCAACACTTTTTCCTTCTCGCTGTCGGCGTAATG
GCAGGTACCGGAGTGGTGGCGGTCTACGGTAATGACGGCGCTATAACGGA
GACTAAAAAATCTCCATTCTCCGTTAAAGTCGGTCTAGCTCAGATGCTTC
GAGGCGGCGTTATAATGGACGTCGTTACTCCCGAGCAAGCGCGAGTCGCG
GAAGAGGCTGGTGCGTGCGCCGTCATGGCTCTTGAGCGCGTCCCCGCCGA
TATCCGCTCGCAAGGCGGCGTGGCTCGCATGTCTGACCCGCAACTTATCA
AGGAAATCAAACAGTCCGTCACCATCCCCGTCATGGCCAAGGCTCGTATT
GGTCACTTCGTCGAAGCTCAAATTCTCGAAGCTATTGGGATCGATTACGT
CGACGAGAGCGAAGTCTTGACTCCCGCCGACGAAGAGAATCACATCAACA
AGCACAACTTTCGTATCCCCTTCGTATGCGGCTGCCGGAACTTGGGGGAA
GCTTTGAGGAGGATTCGCGAAGGCGCGGCGATGATAAGAACGAAGGGCGA
GGCCGGAACGGGGAATATTATCGAAGCGGTGAGGCACGTGCGGTCTGTGA
TGGGGGATATTAGGGTTCTGAGGAACATGGACGATGACGAGGTGTTCACT
TTCGCAAAGAAGATAGCGGCGCCGTAC
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