CN188575

Overview
NameCN188575
Unique NameCN188575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8622 contig Csv1_Contig8622:467..1225. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDX1_PHAVU (Pyridoxal biosynthesis protein PDX1 OS=Phaseolus vulgaris GN=PDX1 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.587e-77
Identity = 147/180 (81.67%), Postives = 153/180 (85.00%), Query Frame = -2
Query:  220 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASRSE 759
            NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVM DIRVLRNMDDDEVFTFAK IAAPYDLVMQTKQLGRLPVVHF           A+MMQLGCD           GDP KRA+AIV+AVTHYSDPE+LAEVSCGLGEAMVG+NLSD  VERFA+RSE
Sbjct:  133 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMSDIRVLRNMDDDEVFTFAKSIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPAKRARAIVQAVTHYSDPEILAEVSCGLGEAMVGINLSDTNVERFANRSE 312          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDX1_HEVBR (Probable pyridoxal biosynthesis protein PDX1 OS=Hevea brasiliensis GN=PDX1 PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 2.276e-76
Identity = 144/180 (80.00%), Postives = 155/180 (86.11%), Query Frame = -2
Query:  220 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASRSE 759
            NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGN+IEAVRHVRSVMGDIR+LRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVV F           A+MMQLGCD           GDP +RA+AIV+AVTHYSDP++LAEVSCGLGEAMVG+NL+D KVERFA+RSE
Sbjct:  130 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNVIEAVRHVRSVMGDIRLLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYSDPDMLAEVSCGLGEAMVGINLNDKKVERFANRSE 309          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDX13_ARATH (Pyridoxal biosynthesis protein PDX1.3 OS=Arabidopsis thaliana GN=PDX13 PE=1 SV=2)

HSP 1 Score: 281.567 bits (719), Expect = 3.287e-75
Identity = 143/180 (79.44%), Postives = 153/180 (85.00%), Query Frame = -2
Query:  220 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASRSE 759
            +HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSV GDIRVLRNMDDDEVFTFAKK+AAPYDLVMQTKQLGRLPVV F           A+MMQLGCD           GDP +RA+AIV+AVTHYSDPE+L EVSCGLGEAMVG+NL+D KVERFA+RSE
Sbjct:  130 HHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVNGDIRVLRNMDDDEVFTFAKKLAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPEMLVEVSCGLGEAMVGINLNDEKVERFANRSE 309          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDX11_ORYSJ (Probable pyridoxal biosynthesis protein PDX1.1 OS=Oryza sativa subsp. japonica GN=PDX11 PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 6.854e-73
Identity = 137/180 (76.11%), Postives = 153/180 (85.00%), Query Frame = -2
Query:  220 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASRSE 759
            +HINKHNFR+PFVCGCR+LGEALRRIREGAAMIRTKGEAGTGN++EAVRHVRSVMGDIR LRNMDDDEVF++AK+IAAPYDLVMQTKQLGRLPVV F           A+MMQLGCD           GDP +RA+AIV+AVTHYSDP++LAEVS GLGEAMVG+NLSD KVERFA+RSE
Sbjct:  139 HHINKHNFRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGNVVEAVRHVRSVMGDIRALRNMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPKILAEVSSGLGEAMVGINLSDPKVERFAARSE 318          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDX11_ARATH (Pyridoxal biosynthesis protein PDX1.1 OS=Arabidopsis thaliana GN=PDX11 PE=1 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 4.158e-70
Identity = 138/180 (76.67%), Postives = 150/180 (83.33%), Query Frame = -2
Query:  220 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASRSE 759
            NHINKHNF+IPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGN++EAVRHVRSV G IR+LR+MDDDEVFT+AKKIAAPYDLV+QTK+LGRLPVV F           A+MMQLGCD           GDPVKRA+AIV+AVT+Y D  VLAEVSCGLGEAMVGLNL D KVERFASRSE
Sbjct:  131 NHINKHNFKIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNVVEAVRHVRSVNGAIRLLRSMDDDEVFTYAKKIAAPYDLVVQTKELGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPVKRAKAIVQAVTNYRDAAVLAEVSCGLGEAMVGLNLDD-KVERFASRSE 309          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDX1_GINBI (Probable pyridoxal biosynthesis protein PDX1 OS=Ginkgo biloba GN=PDX1 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.064e-69
Identity = 131/180 (72.78%), Postives = 148/180 (82.22%), Query Frame = -2
Query:  220 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASRSE 759
            +HINKHNFRIPFVCGCRNLGEALRRI EGAAMIRTKGEAGTGN+IEAVRHVRSV+GDIR L+++DDDEVF FAK+IAAPY+LV QTKQLGRLPVV+F           A+MMQLGCD           GDP +RA+AIV+AVTHY+DP +LAEVSC LGEAMVG+NL D KVER+A RSE
Sbjct:  130 HHINKHNFRIPFVCGCRNLGEALRRIAEGAAMIRTKGEAGTGNVIEAVRHVRSVLGDIRKLQSLDDDEVFAFAKQIAAPYELVRQTKQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYNDPHILAEVSCSLGEAMVGINLKDEKVERYAERSE 309          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDX12_ORYSJ (Probable pyridoxal biosynthesis protein PDX1.2 OS=Oryza sativa subsp. japonica GN=PDX12 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.520e-69
Identity = 134/182 (73.63%), Postives = 152/182 (83.52%), Query Frame = -2
Query:  220 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHK--VERFASRSE 759
            +HINK+NFR+PFVCGCR+LGEALRRIREGAAMIRTKGEAGTGN++EAVRHVRSVMGDIR LR+MDDDEVF++AK+IAAPYDLVMQTKQLGRLPVV F           A+MMQLGCD           GDP  RA+AIV+AVTHYSDP++LAEVS GLGEAMVG+NLSD K  VERFA+RS+
Sbjct:  132 HHINKNNFRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGNVVEAVRHVRSVMGDIRALRSMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPALRARAIVQAVTHYSDPKILAEVSSGLGEAMVGINLSDPKIHVERFAARSD 313          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_CHLSY (Pyridoxal biosynthesis lyase pdxS OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=pdxS PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.875e-54
Identity = 104/178 (58.43%), Postives = 133/178 (74.72%), Query Frame = -2
Query:  226 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 759
            +HINKH FR+PFVCGCRNLGEALRR+ EGAAM+RTKGEAGTGN++EAVRH R+V  +IR L++M++DE+FT+AK+I APY+LV Q    G+LPVV+F           A++MQLG D           GDPVKRA+AIV A THY+DPE++AEVS GLGEAMVG+N+     ++  +R
Sbjct:  113 HHINKHKFRVPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARAVYSEIRRLQSMNEDELFTYAKQIQAPYELVKQVATEGKLPVVNFAAGGIATPADAALLMQLGVDGIFVGSGIFKSGDPVKRARAIVEATTHYNDPEIIAEVSKGLGEAMVGINIDQIPADQLMAR 290          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_CHLAA (Pyridoxal biosynthesis lyase pdxS OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=pdxS PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.875e-54
Identity = 104/178 (58.43%), Postives = 133/178 (74.72%), Query Frame = -2
Query:  226 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 759
            +HINKH FR+PFVCGCRNLGEALRR+ EGAAM+RTKGEAGTGN++EAVRH R+V  +IR L++M++DE+FT+AK+I APY+LV Q    G+LPVV+F           A++MQLG D           GDPVKRA+AIV A THY+DPE++AEVS GLGEAMVG+N+     ++  +R
Sbjct:  113 HHINKHKFRVPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARAVYSEIRRLQSMNEDELFTYAKQIQAPYELVKQVATEGKLPVVNFAAGGIATPADAALLMQLGVDGIFVGSGIFKSGDPVKRARAIVEATTHYNDPEIIAEVSKGLGEAMVGINIDQIPADQLMAR 290          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_CHLAD (Pyridoxal biosynthesis lyase pdxS OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pdxS PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.199e-54
Identity = 104/178 (58.43%), Postives = 133/178 (74.72%), Query Frame = -2
Query:  226 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 759
            +HINKH FR+PFVCGCRNLGEALRRI EGAAM+RTKGEAGTGN++EAVRH R+V  +IR L++M++DE+FT+AK+I APY+LV Q    G+LPVV+F           A++MQLG D           G+P+KRA+AIV A THY+DPE++AEVS GLGEAMVG+N+     E+  +R
Sbjct:  113 HHINKHKFRVPFVCGCRNLGEALRRIAEGAAMLRTKGEAGTGNVVEAVRHARAVYSEIRRLQSMNEDELFTYAKQIQAPYELVKQVATEGKLPVVNFAAGGIATPADAALLMQLGVDGIFVGSGIFKSGNPIKRARAIVEATTHYNDPEIIAEVSKGLGEAMVGINIDQIPAEQLMAR 290          
The following BLAST results are available for this feature:
BLAST of CN188575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
PDX1_PHAVU4.587e-7781.67Pyridoxal biosynthesis protein PDX1 OS=Phaseolus v... [more]
PDX1_HEVBR2.276e-7680.00Probable pyridoxal biosynthesis protein PDX1 OS=He... [more]
PDX13_ARATH3.287e-7579.44Pyridoxal biosynthesis protein PDX1.3 OS=Arabidops... [more]
PDX11_ORYSJ6.854e-7376.11Probable pyridoxal biosynthesis protein PDX1.1 OS=... [more]
PDX11_ARATH4.158e-7076.67Pyridoxal biosynthesis protein PDX1.1 OS=Arabidops... [more]
PDX1_GINBI2.064e-6972.78Probable pyridoxal biosynthesis protein PDX1 OS=Gi... [more]
PDX12_ORYSJ3.520e-6973.63Probable pyridoxal biosynthesis protein PDX1.2 OS=... [more]
PDXS_CHLSY1.875e-5458.43Pyridoxal biosynthesis lyase pdxS OS=Chloroflexus ... [more]
PDXS_CHLAA1.875e-5458.43Pyridoxal biosynthesis lyase pdxS OS=Chloroflexus ... [more]
PDXS_CHLAD3.199e-5458.43Pyridoxal biosynthesis lyase pdxS OS=Chloroflexus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188575 ID=CN188575; Name=CN188575; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTTGCGAAAATATTCATATTGGTAAAGAAGACCATTAG
TTTTCAATTGACAAGTTGTGTAAATTGAACTAACACCCAAAGAAAACATT
ACGACAACTACTGCGGTTTGAAGTTTGAATCCCGCTTACTACATAAGATT
TAAAGAAAAAGGAAAAAGCTTACAGATAATGATTAATAAAGGGCTTCGGG
ACCTCATCTCTTTCATTTATTCGGAGCGACTAGCGAACCTCTCAACCTTG
TGGTCACTCAAATTAAGACCCACCATGGCCTCGCCCAACCCGCAGCTCAC
CTCCGCCAACACCTCCGGGTCACTGTAATGAGTCACCGCCCGTACAATTG
CCTGGGCCCGCTTCACCGGGTCCCCGCTCTTAAACACGCCCGACCCGACA
AACACTCCGTCGCATCCAAGTTGCATCATCATCGCTGCATCCGCCGGCGT
CGCCACTCCTCCCGCTGCGAAGTGCACCACCGGCAACCGCCCCAGCTGCT
TCGTCTGCATCACCAAGTCGTACGGCGCCGCTATCTTCTTTGCGAAAGTG
AACACCTCGTCATCGTCCATGTTCCTCAGAACCCTAATATCCCCCATCAC
AGACCGCACGTGCCTCACCGCTTCGATAATATTCCCCGTTCCGGCCTCGC
CCTTCGTTCTTATCATCGCCGCGCCTTCGCGAATCCTCCTCAAAGCTTCC
CCCAAGTTCCGGCAGCCGCATACGAAGGGGATACGAAAGTTGTGCTTGTT
GATGTGATTC
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