CN188573

Overview
NameCN188573
Unique NameCN188573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4944 contig Csv1_Contig4944:208..1051. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188573 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.593e-28
Identity = 66/121 (54.55%), Postives = 80/121 (66.12%), Query Frame = -2
Query:  411 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXARKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 773
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                   ARKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110          
The following BLAST results are available for this feature:
BLAST of CN188573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.593e-2854.55Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188573 ID=CN188573; Name=CN188573; organism=Citrus sinensis; type=EST; length=846bp
TTTTTAGAGAGCACTTATTTANAATAATAAAACATATATGCTCATCACGC
CCGTCCACGAAGGGATGATCTTGGCTCTTACAAAATGACAATCAAAAACA
TGTCCTAAACCCAAAAACCAGCAACCTTTCATCTCCGCCCACAGCTTAGC
AATCCTCACATCACATACAATTATTAAATTATATGATATAAAAACATCAC
AGTCTTTAGTTTACTTTTAGTCAGCAGCATTTTAAAACCAAACTTTAGAT
AGGAAGGACACGTAATACAAATAGCATTAACAAAACGACAAGGACACGTT
GCGAAATCCAAAACGAAACGACACTATCTACAGACTACAGGCAACTCATC
CGGTGAGTTGGTGACCCATCACATTCATTTACATCGCTGGAGCGTATCAT
CCACTCAGTGATGATGCTTGCTCCTAGTCTCCCCACTGTAAAGCCAGTCA
TAAACAGTGGGAGAGTTAGGATGTGTGGGCTTGTCAAAGACCTCTGCACC
GATACCCCTAGTAGCAAGGTTGCTACCGGGGTGAAACACGCTCCTCCACA
CGTTGTCCTTACGCGCCGACAGCGGCGTCGTCGGCGTCACTGGCGTCGAC
GGTGCCCCTGGACTCGCTGGCATTGACAGAGACCTCTGGAACTTGCCCGA
CGACGACTCCGCCTCACCACCCTCTTTGACTGCTAAGGGTGTTGTGGTGA
TTTTCCTCAGCCTGCCAAGGCCACGATCAGGCTGAGGCCCTGCCACAACA
TCGTCCCAAAGCTTCTCTAGCATCTTTAAATTTACAATTTAGCTGCTAGT
TTCTAAATCTTTTACCTCTTCTTCAGTGAGATCGGCTACTTCCTCT
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