CN188564

Overview
NameCN188564
Unique NameCN188564
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig883 contig Csv1_Contig883:39..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188564 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.343e-58
Identity = 111/162 (68.52%), Postives = 127/162 (78.40%), Query Frame = 2
Query:   86 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDFPLPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 571
            MSLIP+FFG RR++VFDPFSLDVWDPF+DFP P+  SSA   +F  E SA V+ RVDWKETPEAHVFKAD+PGL              LQISG+R +E+EDKNDTWHR ERSSG F RRFRLPEN K++Q+KASMENGVLTVTVPK EE +K + KAIEISG
Sbjct:    1 MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPK-EEVKKPDVKAIEISG 161          
BLAST of CN188564 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.163e-57
Identity = 112/162 (69.14%), Postives = 125/162 (77.16%), Query Frame = 2
Query:   86 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDFPLPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 571
            MSLIPSFFG RRS+VFDPFSLDVWDPF+DFP  +   SALS+ FP E SA V+ RVDWKETPEAHVFKADLPG+              LQISG+R +E+EDKND WHR ERSSG F RRFRLPEN KMDQ+KA+MENGVLTVTVPK EE +K   K I+ISG
Sbjct:    1 MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNN---SALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPK-EEVKKPEVKTIDISG 158          
BLAST of CN188564 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.740e-56
Identity = 111/162 (68.52%), Postives = 123/162 (75.93%), Query Frame = 2
Query:   86 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDFPLPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 571
            MSLIPSFFG RRSSVFDPFSLDVWDPF+DFP PS  S+        E SA V+ RVDWKETPEAHVFKAD+PGL              LQISG+R +E+EDKNDTWHR ERSSG   RRFRLPEN K+DQ+KASMENGVLTVTVPK EE +K + KAI+ISG
Sbjct:    1 MSLIPSFFGGRRSSVFDPFSLDVWDPFKDFPFPSSLSA--------ENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPK-EEIKKPDVKAIDISG 153          
BLAST of CN188564 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.856e-55
Identity = 110/162 (67.90%), Postives = 123/162 (75.93%), Query Frame = 2
Query:   86 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDFPLPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 571
            MSLIPSFF  RRS+VFDPFSLDVWDP +DFP  +   S+ S+ FP E  A V+ RVDWKETPEAHVFKADLPGL              LQISG+R +E+EDKND WHR ERSSG F RRFRLPEN KMD++KASMENGVLTVTVPK EE +KA  K+IEISG
Sbjct:    1 MSLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFSN---SSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPK-EEIKKAEVKSIEISG 158          
BLAST of CN188564 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.052e-54
Identity = 107/162 (66.05%), Postives = 124/162 (76.54%), Query Frame = 2
Query:   86 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDFPLPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 571
            MSLIP FFG RRS+VFDPFSLD+WDPF+DF +P+   SA       E SA V+ RVDWKETPEAHVFKAD+PGL              LQISG+R +E+EDKNDTWHR ERSSG F+RRFRLPEN K++++KASMENGVLTVTVPK EE +K + KAIEISG
Sbjct:    1 MSLIPGFFGGRRSNVFDPFSLDMWDPFKDFHVPTSSVSA-------ENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPK-EEVKKPDVKAIEISG 154          
BLAST of CN188564 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.052e-54
Identity = 108/162 (66.67%), Postives = 122/162 (75.31%), Query Frame = 2
Query:   86 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDFPLPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 571
            MSLIPS FG RRS+VFDPFSLDVWDPF+DF  P+  S+        E SA VN RVDWKETPEAHVF+AD+PGL              LQISG+R +E+EDKNDTWHR ERSSG F RRFRLPEN K++Q+KASMENGVLTVTVPK EE +K + KAIEISG
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSLDVWDPFKDFHFPTSLSA--------ENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPK-EEVKKPDVKAIEISG 153          
BLAST of CN188564 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 7.799e-54
Identity = 108/165 (65.45%), Postives = 125/165 (75.76%), Query Frame = 2
Query:   86 MSLIPSFFGNRR--SSVFDPFSLDVWDPFRDFPLPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEA-RKANAKAIEISG 571
            MSLIPSFFGN R  +S+FDPFSLDVWDPF++   PS  S         ETSA+ NARVDWKET EAHVFKADLPG+              L+ISG+R +E+E+K DTWHR ERSSG FSR+F+LPENVKMDQ+KASMENGVLTVTVPKVEEA +KA  K+I+ISG
Sbjct:    1 MSLIPSFFGNNRRSNSIFDPFSLDVWDPFKELQFPSSLSG--------ETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVTVPKVEEAKKKAQVKSIDISG 157          
BLAST of CN188564 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.602e-53
Identity = 106/163 (65.03%), Postives = 124/163 (76.07%), Query Frame = 2
Query:   86 MSLIPSFFGN-RRSSVFDPFSLDVWDPFRDFPLPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 571
            MS+IPSFF N RRS++FDPFSLDVWDPF++           SS    E SA+VNARVDW+ETPEAHVFKADLPGL              L+ISG+R +E+EDKNDTWHR ERSSG F+RRFRLPENVKMDQ+KA+MENGVLTVTVPK  E +KA+ K+I+ISG
Sbjct:    1 MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELT---------SSSLSRENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKA-ETKKADVKSIQISG 153          
BLAST of CN188564 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.126e-52
Identity = 106/162 (65.43%), Postives = 124/162 (76.54%), Query Frame = 2
Query:   86 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDFPLPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 571
            MS+IPSFFG RRS+VFDPFSLDVWDPF+DFPL +  SSA  S+F  ET+A VN  +DWKETP+AHVFKADLPGL              LQISG+R  E+E+KND WHR ERSSG F RRFRLPEN K+D++KA+M NGV+TVTVPKV E +K   KAI+ISG
Sbjct:    1 MSIIPSFFGGRRSNVFDPFSLDVWDPFKDFPLVT--SSA--SEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKV-EIKKPEVKAIDISG 157          
BLAST of CN188564 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.623e-51
Identity = 102/162 (62.96%), Postives = 119/162 (73.46%), Query Frame = 2
Query:   86 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDFPLPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 571
            MSLIPS FG  RS+VFDPFSLD+WDPF+DF +P+   SA       E SA VN RVDWKET EAHV KAD+PGL              LQISG+R +E+EDKNDTWHR +RSSG F RRFRLPEN K++Q+KA MENGVLTVT+PK EE +K++ K IEISG
Sbjct:    1 MSLIPSIFGGPRSNVFDPFSLDMWDPFKDFHVPTSSVSA-------ENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPK-EEVKKSDVKPIEISG 154          
The following BLAST results are available for this feature:
BLAST of CN188564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
HSP16_SOYBN2.343e-5868.5218.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA1.163e-5769.1418.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_SOYBN3.740e-5668.5217.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA1.856e-5567.9018.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP14_SOYBN2.052e-5466.0517.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP13_SOYBN2.052e-5466.6717.5 kDa class I heat shock protein OS=Glycine max... [more]
HS178_ARATH7.799e-5465.4517.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17B_ARATH6.602e-5365.0317.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HSP11_DAUCA1.126e-5265.4317.8 kDa class I heat shock protein OS=Daucus caro... [more]
HSP15_SOYBN3.623e-5162.9617.6 kDa class I heat shock protein OS=Glycine max... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188564 ID=CN188564; Name=CN188564; organism=Citrus sinensis; type=EST; length=688bp
CGTTTTTCCTGTAATCACTTGCGTATCCTGCATTCTGCAACACCTACTTT
TCTATTAGTTCATAACCCGAAAAGAAAGCTAGAAAATGTCGCTGATTCCA
AGCTTCTTCGGCAACCGACGCAGCAGTGTGTTCGATCCATTCTCGCTCGA
CGTTTGGGATCCATTCAGGGACTTCCCTTTGCCGTCTGGTTATTCGTCTG
CGCTGTCCTCCCAGTTCCCTCCAGAAACCTCCGCTGTCGTTAACGCCCGC
GTGGACTGGAAGGAAACCCCGGAAGCCCACGTGTTCAAGGCCGATCTCCC
GGGGCTGAGGAAAGAGGAAGTGAAGGTCGAGGTCGAGGACGACAGGGTGC
TTCAGATAAGCGGGCAGAGGGGGATCGAGAGGGAGGACAAGAACGACACG
TGGCATCGCTGGGAGCGCAGCAGCGGCATGTTCTCGAGGAGGTTCAGGCT
GCCTGAGAATGTGAAGATGGATCAGATAAAGGCTTCCATGGAGAATGGTG
TGCTCACTGTTACAGTCCCTAAGGTGGAGGAGGCCAGGAAAGCTAATGCC
AAGGCTATTGAAATTTCTGGCTGATAAATTGATATATTTAATAAACGAAG
ATGATTTAAAATTTGTGTTGAATCCCGAGTGTGTTTGCGTGGTTTATTAC
TTCGTTCTGTGTTGTATTTATGTGACGCCTACCATTTT
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