CN188563

Overview
NameCN188563
Unique NameCN188563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.438e-44
Identity = 90/138 (65.22%), Postives = 103/138 (74.64%), Query Frame = -3
Query:  230 DPFRDFPFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 643
            DPF+DFPFP+  S A   +F  E SA V+ RV+WKETPEAHVFKAD PGL             VLQISG+R +E+EDKNDTWHR E SSG F RRFRLPEN K++Q+KASMENGVLTVTVPK EE +K + KAIEISG
Sbjct:   25 DPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPK-EEVKKPDVKAIEISG 161          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.714e-42
Identity = 88/138 (63.77%), Postives = 101/138 (73.19%), Query Frame = -3
Query:  230 DPFRDFPFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 643
            DPF+DFPF +    ALS+ FP E SA V+ RV+WKETPEAHVFKAD PG+             VLQISG+R +E+EDKND WHR E SSG F RRFRLPEN KMDQ+KA+MENGVLTVTVPK EE +K   K I+ISG
Sbjct:   25 DPFKDFPFNNS---ALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPK-EEVKKPEVKTIDISG 158          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.759e-41
Identity = 87/137 (63.50%), Postives = 100/137 (72.99%), Query Frame = -3
Query:  233 DPFRDFPFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEIS 643
            DPF+DFPF +  S   +S FP E SA V+ R++WKETPEAHVFKAD PGL             VLQISG+R +E+EDKND WHR E SSG F RRFRLPEN KMDQ+KA+MENGVLTVTVPK EE +K   K+IEIS
Sbjct:    9 DPFKDFPFTN--SALSASSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPK-EEIKKPEVKSIEIS 142          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.119e-41
Identity = 88/138 (63.77%), Postives = 99/138 (71.74%), Query Frame = -3
Query:  230 DPFRDFPFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 643
            DPF+DFPFPS  S         E SA V+ RV+WKETPEAHVFKAD PGL             VLQISG+R +E+EDKNDTWHR E SSG   RRFRLPEN K+DQ+KASMENGVLTVTVPK EE +K + KAI+ISG
Sbjct:   25 DPFKDFPFPSSLSA--------ENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPK-EEIKKPDVKAIDISG 153          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.732e-41
Identity = 87/138 (63.04%), Postives = 100/138 (72.46%), Query Frame = -3
Query:  230 DPFRDFPFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 643
            DP +DFPF +    + S+ FP E  A V+ RV+WKETPEAHVFKAD PGL             VLQISG+R +E+EDKND WHR E SSG F RRFRLPEN KMD++KASMENGVLTVTVPK EE +KA  K+IEISG
Sbjct:   25 DPLKDFPFSNS---SPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPK-EEIKKAEVKSIEISG 158          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.541e-40
Identity = 87/138 (63.04%), Postives = 99/138 (71.74%), Query Frame = -3
Query:  230 DPFRDFPFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 643
            DPF+DF FP+  S         E SA VN RV+WKETPEAHVF+AD PGL             VLQISG+R +E+EDKNDTWHR E SSG F RRFRLPEN K++Q+KASMENGVLTVTVPK EE +K + KAIEISG
Sbjct:   25 DPFKDFHFPTSLSA--------ENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPK-EEVKKPDVKAIEISG 153          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.318e-40
Identity = 86/139 (61.87%), Postives = 102/139 (73.38%), Query Frame = -3
Query:  230 DPFRDFPFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEA-RKANAKAIEISG 643
            DPF++  FPS  S         ETSA+ NARV+WKET EAHVFKAD PG+             VL+ISG+R +E+E+K DTWHR E SSG FSR+F+LPENVKMDQ+KASMENGVLTVTVPKVEEA +KA  K+I+ISG
Sbjct:   27 DPFKELQFPSSLS--------GETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVTVPKVEEAKKKAQVKSIDISG 157          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.809e-39
Identity = 85/138 (61.59%), Postives = 99/138 (71.74%), Query Frame = -3
Query:  230 DPFRDFPFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 643
            DPF+DF  P+       S    E SA V+ RV+WKETPEAHVFKAD PGL             VLQISG+R +E+EDKNDTWHR E SSG F+RRFRLPEN K++++KASMENGVLTVTVPK EE +K + KAIEISG
Sbjct:   25 DPFKDFHVPT-------SSVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPK-EEVKKPDVKAIEISG 154          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.791e-39
Identity = 84/138 (60.87%), Postives = 100/138 (72.46%), Query Frame = -3
Query:  230 DPFRDFPFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 643
            DPF++           SS    E SA+VNARV+W+ETPEAHVFKAD PGL             VL+ISG+R +E+EDKNDTWHR E SSG F+RRFRLPENVKMDQ+KA+MENGVLTVTVPK  E +KA+ K+I+ISG
Sbjct:   26 DPFKELT---------SSSLSRENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKA-ETKKADVKSIQISG 153          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.821e-38
Identity = 84/138 (60.87%), Postives = 94/138 (68.12%), Query Frame = -3
Query:  230 DPFRDFPFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 643
            DPFR+  FPS  S         E+SA  N R++WKETPE HVFK D PGL             VLQISG+R +E+EDKND WHR E SSG F RRFRLPEN KMDQ+KASMENGVLTVTVPK EE +K   K+IEISG
Sbjct:   26 DPFRELGFPSTNS--------GESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPK-EEVKKPEVKSIEISG 154          
The following BLAST results are available for this feature:
BLAST of CN188563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
HSP16_SOYBN8.438e-4465.2218.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA2.714e-4263.7718.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_MEDSA1.759e-4163.5018.1 kDa class I heat shock protein (Fragment) OS=... [more]
HSP11_SOYBN5.119e-4163.7717.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA8.732e-4163.0418.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP13_SOYBN2.541e-4063.0417.5 kDa class I heat shock protein OS=Glycine max... [more]
HS178_ARATH3.318e-4061.8717.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP14_SOYBN2.809e-3961.5917.5 kDa class I heat shock protein OS=Glycine max... [more]
HS17B_ARATH4.791e-3960.8717.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HSP11_SOLLC1.821e-3860.8717.8 kDa class I heat shock protein OS=Solanum lyc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188563 ID=CN188563; Name=CN188563; organism=Citrus sinensis; type=EST; length=645bp
TCTTTTTCATTTTTTGATTTTTTAAATTCTAAAGAGCACGAATACCTTCT
TAAAAATATCAAAAGACGCGCAGGGTTACAAAATTACACATCCCATGATT
ACACGACACACAAAAATGGGAGGCGTCACATAAATACAACACAAAACGAA
GTAATAAACCACGCAAACACACTCTGGATTCAACACAAATTTTAAATCAT
CTTCCTTTATTAAATATATCAATTTATCAGCCAGAAATTTCAATAGCCTT
GGCATTAGCTTTCCTGGCCTCCTCCACCTTAGGGACTGTAACAGTGAGCA
CACCATTCTCCATGGAAGCCTTTATCTGATCCATCTTCACATTCTCAGGC
AGCCTGAACCTCCTCGAGAACATGCCGCTGCTGCACTCCCAGCGATGCCA
CGTGTCGTTCTTGTCCTCCCTCTCGATCCCCCTCTGCCCGCTTATCTGAA
GCACCCTGTCGTCCTCGACCTCGACCTTCACTTCCACTTTCCTCAGCCCC
GGGAAATCGGCCTTGAACACGTGGGCTTCCGGGGTTTCCTTCCACTCCAC
GCGGGCGTTAACGACAGCGGAGGTTTCTGGAGGGAACTGGGAGGACAGCG
CACACGAATAACCTGACGGGAAAGGGAAGTCCCTGAATGGATCCC
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