CN188551

Overview
NameCN188551
Unique NameCN188551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3947 contig Csv1_Contig3947:42..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDHP_MEDSA (Malate dehydrogenase [NADP], chloroplastic OS=Medicago sativa GN=MDH1 PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.521e-66
Identity = 130/151 (86.09%), Postives = 139/151 (92.05%), Query Frame = 1
Query:  262 ISCSV--NQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            ISCSV  NQVQAP AV+  DPKSK  DCYGVFCLTYDLKAEEETKSWKK++ IAVSGAAGMI+NHLLFKLA+GEV GP+QPIALKLLGSERSLQALEGVAMELEDSLFPLLREV I I+PYE+F+DAEWALLIGAKPRGPGMERA LLDIN
Sbjct:   47 ISCSVAPNQVQAP-AVQTQDPKSKP-DCYGVFCLTYDLKAEEETKSWKKLITIAVSGAAGMISNHLLFKLASGEVFGPNQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVVISIDPYEVFQDAEWALLIGAKPRGPGMERAALLDIN 195          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDHP_PEA (Malate dehydrogenase [NADP], chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 2.740e-65
Identity = 128/151 (84.77%), Postives = 137/151 (90.73%), Query Frame = 1
Query:  262 ISCSV--NQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            ISCSV  NQVQ P A  QD PK K  DCYGVFCLTYDLKAEEETKSWKK++NIAVSGAAGMI+NHLLFKLA+GEV GPDQPIALKLLGSERS+QALEGVAMELEDSLFPLLREV I I+PYE+F+DAEWALLIGAKPRGPG+ERA LLDIN
Sbjct:   51 ISCSVAPNQVQVPAAQTQD-PKGKP-DCYGVFCLTYDLKAEEETKSWKKLINIAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSIQALEGVAMELEDSLFPLLREVVISIDPYEVFQDAEWALLIGAKPRGPGVERAALLDIN 199          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDHP_MESCR (Malate dehydrogenase [NADP], chloroplastic OS=Mesembryanthemum crystallinum GN=MDH1 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.746e-63
Identity = 121/151 (80.13%), Postives = 133/151 (88.08%), Query Frame = 1
Query:  262 ISCSV--NQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            I CSV  NQVQAPVAV  +    K  +CYG+FCLTYDLKAEEETK+WKKM+ IAVSGAAGMI+NHLLFKLA+GEV GPDQPIALKLLGSERS  ALEGVAMELEDSL+PLLR V IGI+PY++F+DAEWALLIGAKPRGPGMERA LLDIN
Sbjct:   49 IRCSVAPNQVQAPVAVPAEGQTGKP-ECYGIFCLTYDLKAEEETKTWKKMITIAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSFNALEGVAMELEDSLYPLLRAVSIGIDPYDIFQDAEWALLIGAKPRGPGMERADLLDIN 198          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDHP_FLABI (Malate dehydrogenase [NADP], chloroplastic OS=Flaveria bidentis PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.984e-61
Identity = 116/153 (75.82%), Postives = 134/153 (87.58%), Query Frame = 1
Query:  259 TISCSV---NQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            +I CSV   +Q+QAP+      P  +  +C+GVFCLTYDLKAEEETKSWKK++N+AVSGAAGMI+NHLLFKLA+GEV GPDQPI+LKLLGSERS  ALEGVAMELEDSL+PLLR+V IGI+PYE+F+DAEWALLIGAKPRGPGMERA LLDIN
Sbjct:   65 SIRCSVTSSDQIQAPL------PAKQKPECFGVFCLTYDLKAEEETKSWKKIINVAVSGAAGMISNHLLFKLASGEVFGPDQPISLKLLGSERSFAALEGVAMELEDSLYPLLRQVSIGIDPYEIFQDAEWALLIGAKPRGPGMERADLLDIN 211          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDHP1_SORBI (Malate dehydrogenase [NADP] 1, chloroplastic OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.722e-60
Identity = 118/153 (77.12%), Postives = 131/153 (85.62%), Query Frame = 1
Query:  259 TISCSVN---QVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            T+ CSV+   QVQ  VA  +     K  DC+GVFC TYDLKAE++TKSWKK+VNIAVSGAAGMI+NHLLFKLA+GEV G DQPIALKLLGSERS QALEGVAMELEDSL+PLLREV IGI+PYE+FED +WALLIGAKPRGPGMERA LLDIN
Sbjct:   37 TVRCSVDAAKQVQDGVATAEAPATRK--DCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDIN 187          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDHP_SPIOL (Malate dehydrogenase [NADP], chloroplastic OS=Spinacia oleracea GN=MDH PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.720e-59
Identity = 117/151 (77.48%), Postives = 128/151 (84.77%), Query Frame = 1
Query:  262 ISCSV--NQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            I CS+  NQVQ PVAV       K  +CYGVFC TYDLK EEET+SWKKM+ IA+SGAAG I+NHLLFKLA+G V GPDQPIALKLLGSE+S  ALEGVAMELEDSL+PLLREV IGI+PYE+FEDAEWALLIGAKPRGPGMERA LLDIN
Sbjct:   43 ICCSLAPNQVQTPVAVPTGAQSIKP-ECYGVFCWTYDLKKEEETRSWKKMITIAISGAAGTISNHLLFKLASGVVFGPDQPIALKLLGSEKSFHALEGVAMELEDSLYPLLREVSIGIDPYEVFEDAEWALLIGAKPRGPGMERADLLDIN 192          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDHP2_SORBI (Malate dehydrogenase [NADP] 2, chloroplastic OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.233e-57
Identity = 113/154 (73.38%), Postives = 126/154 (81.82%), Query Frame = 1
Query:  259 TISCSV----NQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            T+ CSV     QVQ  VA       +  N+C+GVFC  YDLKAE++TKSWKK+V IAVSGAAGMI+NHLLFKLA+GEV G DQPIALKLLGSERS QALEGV MELEDSL+PLLREV IGI PYE+F+D +WALLIGAKPRGPGMERA LLDIN
Sbjct:   37 TVRCSVVDAAKQVQDGVATAVGGGAASGNECFGVFCNIYDLKAEDKTKSWKKLVTIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVRMELEDSLYPLLREVSIGIGPYEVFQDVDWALLIGAKPRGPGMERAALLDIN 190          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDHP_MAIZE (Malate dehydrogenase [NADP], chloroplastic OS=Zea mays PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.610e-57
Identity = 111/155 (71.61%), Postives = 130/155 (83.87%), Query Frame = 1
Query:  259 TISCSVNQVQ-----APVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            T+ CSV+  +        AV  + P S+  +C+GVFC TYDLKAE++TKSW+K+VN+AVSGAAGMI+NHLLFKLA+GEV G DQPIALKLLGSERS QALEGVAMELEDSL+PLLREV IGI+PY +F+D +WALLIGAKPRGPGMERA LLDIN
Sbjct:   37 TVRCSVDATKQAQDGVATAVATEAPASR-KECFGVFCTTYDLKAEDKTKSWRKLVNVAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYVVFQDVDWALLIGAKPRGPGMERAALLDIN 190          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_MYCPA (Malate dehydrogenase OS=Mycobacterium paratuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.125e-26
Identity = 59/101 (58.42%), Postives = 79/101 (78.22%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + +AV+GAAG I   LLF+LA+G +LGPD+PI L+LL  E +L+ALEGV MEL+D  FPLL  V+IG +P ++F+ A  ALL+GA+PRGPGMER+ LL+ N
Sbjct:    6 LKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALKALEGVVMELDDCAFPLLSGVEIGADPNKIFDGANLALLVGARPRGPGMERSDLLEAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_MYCA1 (Malate dehydrogenase OS=Mycobacterium avium (strain 104) GN=mdh PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.125e-26
Identity = 59/101 (58.42%), Postives = 79/101 (78.22%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + +AV+GAAG I   LLF+LA+G +LGPD+PI L+LL  E +L+ALEGV MEL+D  FPLL  V+IG +P ++F+ A  ALL+GA+PRGPGMER+ LL+ N
Sbjct:    6 LKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALKALEGVVMELDDCAFPLLSGVEIGADPNKIFDGANLALLVGARPRGPGMERSDLLEAN 106          
The following BLAST results are available for this feature:
BLAST of CN188551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDHP_MEDSA5.521e-6686.09Malate dehydrogenase [NADP], chloroplastic OS=Medi... [more]
MDHP_PEA2.740e-6584.77Malate dehydrogenase [NADP], chloroplastic OS=Pisu... [more]
MDHP_MESCR9.746e-6380.13Malate dehydrogenase [NADP], chloroplastic OS=Mese... [more]
MDHP_FLABI6.984e-6175.82Malate dehydrogenase [NADP], chloroplastic OS=Flav... [more]
MDHP1_SORBI7.722e-6077.12Malate dehydrogenase [NADP] 1, chloroplastic OS=So... [more]
MDHP_SPIOL1.720e-5977.48Malate dehydrogenase [NADP], chloroplastic OS=Spin... [more]
MDHP2_SORBI1.233e-5773.38Malate dehydrogenase [NADP] 2, chloroplastic OS=So... [more]
MDHP_MAIZE1.610e-5771.61Malate dehydrogenase [NADP], chloroplastic OS=Zea ... [more]
MDH_MYCPA1.125e-2658.42Malate dehydrogenase OS=Mycobacterium paratubercul... [more]
MDH_MYCA11.125e-2658.42Malate dehydrogenase OS=Mycobacterium avium (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188551 ID=CN188551; Name=CN188551; organism=Citrus sinensis; type=EST; length=709bp
GCGTTCCTTCCGAATCTTTCTCTCAAGACAAGACTTTTTAGCTTTAAATC
TTTTCTGTTCACCTGCTGTTTCTTTTTCTCGAAATACTTTCTTTATATAC
CTCTGCTGGCTGCTGACATGGCGGTGGTGGCACAGCTCTCACCATCTTCA
TACACCGAAACCACCCGTCTCAGCTCTTCACAGCTCTCACTCTCATCGAC
CCACCTTTCATCTCTCCGTCGCCGTGCTTTTCGACCCATCATCCGACCCA
GAAACCCCACCATCTCTTGCTCTGTAAATCAAGTTCAAGCCCCGGTCGCC
GTTGAACAAGATGATCCTAAGAGCAAGACTAACGATTGCTATGGTGTTTT
CTGTCTCACATATGATCTCAAAGCTGAAGAGGAGACAAAATCCTGGAAGA
AAATGGTTAATATTGCTGTGTCGGGTGCTGCTGGGATGATTGCTAATCAT
TTACTTTTCAAACTCGCAGCTGGGGAGGTTTTAGGGCCAGATCAACCGAT
TGCATTGAAACTACTGGGATCTGAAAGGTCCTTACAGGCCCTTGAAGGAG
TGGCGATGGAACTTGAGGATTCCTTGTTTCCTTTGTTGAGGGAGGTGAAA
ATCGGAATAAATCCATATGAGCTGTTTGAAGATGCAGAATGGGCCCTTCT
GATTGGAGCAAAGCCTCGTGGGCCAGGAATGGAAAGAGCCGGCTTATTAG
ATATCAATG
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