CN188545

Overview
NameCN188545
Unique NameCN188545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188545_ssr204 microsatellite CN188545_ssr204:204..215. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2674 contig Csv1_Contig2674:1..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN188545 vs. ExPASy Swiss-Prot
Match: GTOMC_ARATH (Tocopherol O-methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=G-TMT PE=2 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 4.618e-60
Identity = 120/199 (60.30%), Postives = 138/199 (69.35%), Query Frame = 2 
Query:  134 RSSLLFGVSSFSRKLIXXXXXXXXXXXXXXXXXRELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSD--HRAAQVRMIEETLRFAGVS-EDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAP 721
            +SSLLF   S S  +                    L++GIAEFY+E+S LWE+IWGDHMHHGFY+PDSSV +SD  H+ AQ+RMIEE+LRFAGV+ E+  K+ K VVDVGCGIGGSSRYLA KFGA+C GITLSPV                K SFQV DAL QPF DG+FDLVWSMESGEHMPDK+KFV EL RV AP
Sbjct:   25 KSSLLFRSPSSSSSVSMTTTRGNVAVAAAATSTEALRKGIAEFYNETSGLWEEIWGDHMHHGFYDPDSSVQLSDSGHKEAQIRMIEESLRFAGVTDEEEEKKIKKVVDVGCGIGGSSRYLASKFGAECIGITLSPVQAKRANDLAAAQSLAHKASFQVADALDQPFEDGKFDLVWSMESGEHMPDKAKFVKELVRVAAP 223
The following BLAST results are available for this feature:
BLAST of CN188545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GTOMC_ARATH4.618e-6060.30Tocopherol O-methyltransferase, chloroplastic OS=A... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188545 ID=CN188545; Name=CN188545; organism=Citrus sinensis; type=EST; length=721bp
CCTTAAGGGCCGCTCGGACTTCTTCATTCTTTCTGGAACCATAAAAGAAA
AAAGGGTCTCCGACATCCAATCAGAAATGTCCGCGTGTCTCCGCCCTTCC
CTCCTCCCAGCCCCTCCTCCGGCTCCTACGTGGCGAAGTTCCCTGCTTTT
TGGAGTGAGCTCTTTCTCGAGGAAGCTAATAACTCGAGCGTCATCTACGA
CGTCGACGACGACGATGAGTGACGCTGCCGCACGTGAGCTGAAAGAAGGA
ATAGCTGAGTTCTACGACGAGTCGTCTAGCCTTTGGGAGGACATTTGGGG
CGACCACATGCACCACGGATTCTACGAGCCGGATTCCTCCGTCTCCGTCT
CCGACCACCGCGCCGCCCAGGTCCGCATGATCGAAGAGACGCTCCGTTTC
GCCGGCGTTTCCGAGGACCCAACGAAGAGGCCAAAGAATGTTGTGGATGT
TGGCTGTGGGATAGGAGGCAGCTCTAGATACTTGGCTAAGAAATTTGGCG
CTAAATGCCAAGGCATCACTCTCAGTCCCGTCCAAGCACAGAGGGCTAAT
GCCCTTGCTGCTGCTCGAGGCTTAGCCGATAAGGTTTCCTTTCAAGTTGG
AGATGCTTTGCAGCAACCGTTTCCTGATGGGCAATTTGATCTAGTTTGGT
CCATGGAGAGTGGAGAACACATGCCTGACAAATCAAAGTTTGTCAGTGAG
CTGGCTCGAGTTACTGCCCCA
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