CN188541

Overview
NameCN188541
Unique NameCN188541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length600
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6080 contig Csv1_Contig6080:78..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188541 vs. ExPASy Swiss-Prot
Match: RL31_PERFR (60S ribosomal protein L31 OS=Perilla frutescens GN=RPL31 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.261e-43
Identity = 90/121 (74.38%), Postives = 96/121 (79.34%), Query Frame = -1
Query:  193 MVEKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 555
            M +K  K RKEEVV+REYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNK +WS                 RND+EDAKEE YSLVTVAEIP  GLKGLGT+VIDEE+
Sbjct:    1 MADKGSKPRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPEGGLKGLGTQVIDEEE 121          
BLAST of CN188541 vs. ExPASy Swiss-Prot
Match: RL313_ARATH (60S ribosomal protein L31-3 OS=Arabidopsis thaliana GN=RPL31C PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.068e-42
Identity = 87/115 (75.65%), Postives = 94/115 (81.74%), Query Frame = -1
Query:  193 KGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 537
            KGRKEEV+TREYTINLH+RLH CTFKKKAPKAIKEIRKFA+KAMGT DVRVDVKLNKQ+WS                 RND+EDAKEEF+SLVTVAEIP EGL GLGTKVI+EED
Sbjct:    5 KGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEED 119          
BLAST of CN188541 vs. ExPASy Swiss-Prot
Match: RL31_PICMA (60S ribosomal protein L31 OS=Picea mariana GN=RPL31 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.394e-42
Identity = 87/121 (71.90%), Postives = 96/121 (79.34%), Query Frame = -1
Query:  193 MVEKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 555
            MVEK GK R+ EV TREYTINLH+RLHGCTFKK APKA+KEIRKFAQKAMGTTDVR+DVKLNK VWS                 RNDEEDAK+E YS+VTVAE+PPEGL GLGTK+I+EED
Sbjct:    1 MVEK-GKSRRNEVATREYTINLHRRLHGCTFKKMAPKAVKEIRKFAQKAMGTTDVRLDVKLNKAVWSRGIRSVPRRMRVRISRKRNDEEDAKDELYSIVTVAEVPPEGLTGLGTKIIEEED 120          
BLAST of CN188541 vs. ExPASy Swiss-Prot
Match: RL31_NICGU (60S ribosomal protein L31 OS=Nicotiana glutinosa GN=RPL31 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.821e-42
Identity = 87/115 (75.65%), Postives = 93/115 (80.87%), Query Frame = -1
Query:  193 KGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 537
            KGRKEEVVTREYTINLHKRLH CTFKKKAP AIKEIRKFAQKAMGT DVRVDVKLNKQ+WS                 RND+EDAKEE YSLVTVAEIP +GLKGLGTK+I++ED
Sbjct:    6 KGRKEEVVTREYTINLHKRLHSCTFKKKAPTAIKEIRKFAQKAMGTKDVRVDVKLNKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAEIPAKGLKGLGTKIIEDED 120          
BLAST of CN188541 vs. ExPASy Swiss-Prot
Match: RL312_ARATH (60S ribosomal protein L31-2 OS=Arabidopsis thaliana GN=RPL31B PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.378e-42
Identity = 86/115 (74.78%), Postives = 93/115 (80.87%), Query Frame = -1
Query:  193 KGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 537
            KGRKEEVVTREYTINLH+RLH CTFKKKAPKAIKEIRKFA+K MGT DVRVDVKLNKQ+WS                 RND+EDAKEEF+SLVTVAEIP EGL GLGTK+I+EED
Sbjct:    5 KGRKEEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIEEED 119          
BLAST of CN188541 vs. ExPASy Swiss-Prot
Match: RL311_ARATH (60S ribosomal protein L31-1 OS=Arabidopsis thaliana GN=RPL31A PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.106e-42
Identity = 87/116 (75.00%), Postives = 93/116 (80.17%), Query Frame = -1
Query:  193 GKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 540
            GKGRKEEVVTREYTINLH+RLH CTFKKKAP AIKEIRKFA KAMGT DVRVDVKLNKQ+WS                 RND+EDAKEEF+SLVTVAEIP EGL GLGTKVI+EE+
Sbjct:    4 GKGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119          
BLAST of CN188541 vs. ExPASy Swiss-Prot
Match: RL31_PANGI (60S ribosomal protein L31 OS=Panax ginseng GN=RPL31 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.434e-41
Identity = 88/121 (72.73%), Postives = 95/121 (78.51%), Query Frame = -1
Query:  193 MVEKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 555
            MVEK  KGRKEEVVTREYTINLHKRLHGCTFKKKAP AIKEIRKFAQKAMGT DVRVDVKLNKQ+WS                 RND+EDAKEE YSLVTVA+IP   LKGLG ++I+E+D
Sbjct:    1 MVEKT-KGRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTKDVRVDVKLNKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAKIPAGTLKGLGPQIIEEDD 120          
BLAST of CN188541 vs. ExPASy Swiss-Prot
Match: RL31_CYAPA (60S ribosomal protein L31 OS=Cyanophora paradoxa GN=RPL31 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.655e-27
Identity = 64/114 (56.14%), Postives = 77/114 (67.54%), Query Frame = -1
Query:  196 KGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEE 537
            K R  E+VTREYTINLHKRLHG  FKK+AP+A+KEI+KFA K MGTTDVRVD +LNK VW+                 RND+EDAKE+ Y+LVT   +P    KGL T+ +D E
Sbjct:    8 KSRAAEIVTREYTINLHKRLHGVGFKKRAPRAVKEIKKFASKIMGTTDVRVDPRLNKFVWNQGIRSVPYRVRVRLARKRNDDEDAKEKLYTLVTY--VPVTSFKGLQTQNVDAE 119          
BLAST of CN188541 vs. ExPASy Swiss-Prot
Match: RL31_CHLRE (60S ribosomal protein L31 OS=Chlamydomonas reinhardtii GN=RPL31 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.814e-27
Identity = 66/113 (58.41%), Postives = 76/113 (67.26%), Query Frame = -1
Query:  199 KGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDE 537
            K R +E VTREYTI+L KRLH  +FKK APKA+KEIRKFA K MGT+DVR+DVKLNK VWS                 RND+EDAKEE YS VTVAE   +  KG GT V+ +
Sbjct:    5 KSRSKEQVTREYTIHLSKRLHKTSFKKCAPKAVKEIRKFASKVMGTSDVRLDVKLNKAVWSKGIKNVPTRLRIVISRRRNDDEDAKEEMYSFVTVAE--DQSTKGKGTVVVQD 115          
BLAST of CN188541 vs. ExPASy Swiss-Prot
Match: RL31_SPOFR (60S ribosomal protein L31 OS=Spodoptera frugiperda GN=RpL31 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.323e-26
Identity = 61/116 (52.59%), Postives = 77/116 (66.38%), Query Frame = -1
Query:  202 EKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVID 549
            E+ GK    EVVTREYT+NLHKRLHG  FKK+AP+AIKEIRKFA+K MGT DVRVD +LNK +WS                 RND+ED+  + ++LVT   +P   +KGL T+ +D
Sbjct:    7 ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDVRVDTRLNKFLWSKGVRNVPFRVRVRLSRRRNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 120          
The following BLAST results are available for this feature:
BLAST of CN188541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL31_PERFR1.261e-4374.3860S ribosomal protein L31 OS=Perilla frutescens GN... [more]
RL313_ARATH1.068e-4275.6560S ribosomal protein L31-3 OS=Arabidopsis thalian... [more]
RL31_PICMA1.394e-4271.9060S ribosomal protein L31 OS=Picea mariana GN=RPL3... [more]
RL31_NICGU1.821e-4275.6560S ribosomal protein L31 OS=Nicotiana glutinosa G... [more]
RL312_ARATH2.378e-4274.7860S ribosomal protein L31-2 OS=Arabidopsis thalian... [more]
RL311_ARATH3.106e-4275.0060S ribosomal protein L31-1 OS=Arabidopsis thalian... [more]
RL31_PANGI3.434e-4172.7360S ribosomal protein L31 OS=Panax ginseng GN=RPL3... [more]
RL31_CYAPA1.655e-2756.1460S ribosomal protein L31 OS=Cyanophora paradoxa G... [more]
RL31_CHLRE4.814e-2758.4160S ribosomal protein L31 OS=Chlamydomonas reinhar... [more]
RL31_SPOFR5.323e-2652.5960S ribosomal protein L31 OS=Spodoptera frugiperda... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188541 ID=CN188541; Name=CN188541; organism=Citrus sinensis; type=EST; length=600bp
TTTTTTTTTTTTTTTGAATGAAGTATCAGAAATCTTAAACAGGGCCATTT
GAGGAATCACAATACGTTCACGAAACCCTTTTTTGGCCCTTGGGAGTTCT
AAAAAGTAAATCCAAAACCAAAAAAGCAACTGAATAAGATAAAATTATAG
CCAAAATTTGGAGTTCCTTAGCTAAACAGAAAGGTTGCTTCAATCTTCCT
CATCAATGACCTTGGTGCCCAACCCCTTGAGTCCTTCTGGAGGGATCTCG
GCAACAGTGACGAGAGAGTAGAACTCTTCTTTGGCATCTTCCTCATCGTT
TCTCTTCCGTGCAACACGAACACGAATTCTCCTTGGTACACTACGGATAC
CACGGCTCCACACTTGCTTGTTGAGCTTCACATCCACCCTAACATCAGTT
GTCCCCATGGCTTTTTGAGCAAACTTCCTAATTTCCTTTATGGCTTTTGG
AGCTTTCTTCTTGAAGGTGCAGCCATGCAAGCGTTTGTGGAGATTAATGG
TATATTCGCGAGTGACGACCTCTTCTTTTCTTCCTTTACCAGCTTTCTCC
ACCATTGTTGTTGCTTCTTCTTTTTCTGCTCTCGAGCTTCTACACTCCCT
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