CN188528

Overview
NameCN188528
Unique NameCN188528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5197 contig Csv1_Contig5197:455..1276. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 277.33 bits (708), Expect = 7.017e-74
Identity = 144/202 (71.29%), Postives = 161/202 (79.70%), Query Frame = -2
Query:  204 PPLQIFYLNYQGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 809
            P   + YL Y GIP QAE+ PVA+AP  G+ A +              + GPNANPL+LFPQG+P   +GA GAG+LDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV+ GE N+ +QL   MPQ++ VTPEEREAIERLE MGFDRA+VLEVFFACNKNEELAANYLLDHMHEFED
Sbjct:  179 PERAVEYL-YSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQGMPAADAGA-GAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVE-GEENVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377          
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 271.937 bits (694), Expect = 2.948e-72
Identity = 151/207 (72.95%), Postives = 165/207 (79.71%), Query Frame = -2
Query:  204 PPLQIFYLNYQGIPEQAEVQPVARAPGN-GQAANSXXXXXXXXXXXXXTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG--EGNLGDQLAGLM--PQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 809
            P   + YL Y GIPEQAEV PVAR P + GQ AN               +SGPNANPLDLFPQGLP+VG G  GAG+LDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQNP L+RLIQ+HQADFLRLINEPV+GG   GNL  Q+A  M  PQ+IQVT EEREAIERLEAMGF+RA+VLEVFFACNKNEELAANYLLDHMHEFE+
Sbjct:  218 PERAVEYL-YTGIPEQAEVPPVARPPASAGQPANPPAQTQQPAAAP---ASGPNANPLDLFPQGLPNVG-GNPGAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMHEFEE 419          
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 2.191e-59
Identity = 123/205 (60.00%), Postives = 151/205 (73.66%), Query Frame = -2
Query:  204 PPLQIFYLNYQGIPEQAE--VQPVARAPGNGQAANSXXXXXXXXXXXXXTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG-GEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 809
            P   + YL Y G+PEQ +  V P +  P N   A+               SSGPNA+PLDLFPQ LP+  + AAG G+LD LRN+ QF+ L ++VQANPQ+LQP+LQELGKQNPQ+++LIQE+QA+FL LINEP +G  E NL DQ    MPQ+I VTPEE EAI RLEAMGFDRA+VL+VFFACNK+E+LAANYLLDHM+EF+D
Sbjct:  189 PERAVEYL-YSGVPEQMDIPVPPPSIQPANPTQASQATQPAAPSIL----SSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDD 388          
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 208.379 bits (529), Expect = 4.003e-53
Identity = 115/207 (55.56%), Postives = 147/207 (71.01%), Query Frame = -2
Query:  204 PPLQIFYLNYQGIPEQAEVQ---PVARAPGNGQAANSXXXXXXXXXXXXXTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG--GEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 809
            P   + YL Y GIP+ AEV    P A+  G+G A  +              S GPN++PLDLFPQ      +G+   G+L+FLRN+ QFQ LR MV +NPQ+LQPMLQELGKQNPQL+RLIQE+QA+FL+L+NEP +G  GEG++ DQ    MP +I VTP E+EAI+RLEAMGFDRA+V+E F AC++NEELAANYLL++  +FED
Sbjct:  179 PERAVDYL-YSGIPQTAEVAVPVPEAQIAGSGAAPVAPA------------SGGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371          
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 2.196e-51
Identity = 113/206 (54.85%), Postives = 142/206 (68.93%), Query Frame = -2
Query:  204 PPLQIFYLNYQGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXTSSGPNANPLDLFPQGLPDVGSGAAGA--GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLG--DQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 809
            P   + YL Y GIPE   + P     G G                   S GPN++PLDLFPQ   +  S AAG   G+L+FLR + QFQ LR+MV +NPQ+LQPMLQELGKQNPQL+RLIQE+QA+FL+L+NEP +G +G++   DQ    MP S+ VTPEE+E+IERLEAMGFDRAIV+E F +C++NEELAANYLL+H  +FED
Sbjct:  177 PERAVDYL-YSGIPETVTI-PATNLSGVGSGRE---------LTAPPPSGGPNSSPLDLFPQ---EAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368          
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.346e-31
Identity = 65/134 (48.51%), Postives = 95/134 (70.90%), Query Frame = -2
Query:  228 AAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ----------GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 599
            ++G   L+FLRN PQFQ +R ++Q NP LL  +LQ++G++NPQL++ I +HQ  F++++NEPVQ          GG G + +  +G M   IQVTP+E+EAIERL+A+GF   +V++ +FAC KNE LAAN+LL
Sbjct:  270 SSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 402          
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.594e-31
Identity = 65/134 (48.51%), Postives = 94/134 (70.15%), Query Frame = -2
Query:  228 AAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ----------GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 599
            ++G   L+FLRN PQFQ +R ++Q NP LL  +LQ++G++NPQL++ I +HQ  F++++NEPVQ          GG G + +   G M   IQVTP+E+EAIERL+A+GF   +V++ +FAC KNE LAAN+LL
Sbjct:  269 SSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGGGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 401          
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.122e-30
Identity = 65/139 (46.76%), Postives = 94/139 (67.63%), Query Frame = -2
Query:  228 AGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ----------------GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 596
            +G   L+FLRN PQFQ +R ++Q NP LL  +LQ++G++NPQL++ I +HQ  F++++NEPVQ                GG G + +  +G M   IQVTP+E+EAIERL+A+GF   +V++ +FAC KNE LAAN+LL
Sbjct:  271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 408          
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.061e-29
Identity = 65/140 (46.43%), Postives = 94/140 (67.14%), Query Frame = -2
Query:  228 AGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ-----------------GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 596
            +G   L+FLRN PQFQ +R ++Q NP LL  +LQ++G++NPQL++ I +HQ  F++++NEPVQ                 GG G + +  +G M   IQVTP+E+EAIERL+A+GF   +V++ +FAC KNE LAAN+LL
Sbjct:  271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 409          
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RD23A_MOUSE (UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.385e-29
Identity = 65/140 (46.43%), Postives = 96/140 (68.57%), Query Frame = -2
Query:  207 AAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFE 599
            AAG   L+FLR+ PQFQ +R ++Q NP LL  +LQ+LG++NPQL++ I  HQ  F++++NEP         V+G  G +G++   +    IQVTP+E+EAIERL+A+GF  ++V++ +FAC KNE LAAN+LL    + E
Sbjct:  226 AAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 363          
The following BLAST results are available for this feature:
BLAST of CN188528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RD23D_ARATH7.017e-7471.29Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RD23C_ARATH2.948e-7272.95Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RAD23_ORYSJ2.191e-5960.00Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23A_ARATH4.003e-5355.56Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23B_ARATH2.196e-5154.85Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RD23B_HUMAN7.346e-3148.51UV excision repair protein RAD23 homolog B OS=Homo... [more]
RD23B_BOVIN9.594e-3148.51UV excision repair protein RAD23 homolog B OS=Bos ... [more]
RD23B_RAT8.122e-3046.76UV excision repair protein RAD23 homolog B OS=Ratt... [more]
RD23B_MOUSE1.061e-2946.43UV excision repair protein RAD23 homolog B OS=Mus ... [more]
RD23A_MOUSE1.385e-2946.43UV excision repair protein RAD23 homolog A OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006D22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006D22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188528 ID=CN188528; Name=CN188528; organism=Citrus sinensis; type=EST; length=822bp
CTTTTTTTTGAGATGTTCATCTTGCATTACTTGTTCACTCTCCACACATA
CCATAGCATGAATATCTGAACTTTGTTTAACAAATGAAGTCCAGGAGAAA
TGAGAAGGGAAAGAAACTAATTAGAGGTATTTTTTAATAAATGCCGTCCA
AAGGTAGTAACCATCATTTTCATCTTGAATCTTTTCTATTCCCCTTTCAA
TCAATCCTCAAACTCATGCATATGGTCTAAAAGGTAGTTGGCAGCAAGTT
CCTCATTCTTGTTGCAGGCAAAGAACACCTCCAATACAATTGCTCGATCA
AAGCCCATTGCCTCAAGACGTTCTATGGCTTCACGTTCTTCGGGCGTGAC
TTGTATTGACTGTGGCATTAACCCAGCAAGCTGGTCCCCCAAATTCCCCT
CACCACCTTGAACAGGTTCATTGATAAGCCGAAGGAAGTCAGCCTGATGT
TCCTGAATAAGCCTCACTAGCTGAGGATTTTGTTTCCCCAACTCTTGAAG
CATGGGCTGCAATAATTGAGGATTTGCCTGCACCATAGCTCGCAAAACTT
GAAACTGTGGACTATTACGTAAAAAGTCAAGACTGCCAGCGCCAGCTGCA
CCTGAACCCACGTCAGGAAGGCCCTGAGGAAAGAGGTCCAAAGGATTTGC
ATTTGGCCCACTAGAAGTAACGGGTGCCGGTTGGGTTGGCTGTGGCATCT
GAGTTGGAGAGTTAGCAGCTTGTCCATTACCAGGGGCGCGGGCCACAGGT
TGAACTTCAGCTTGCTCAGGTATACCCTGATAGTTTAAATAGAAAATTTG
GAGGGGGGGGAAAAATAAAAAA
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