CN188527

Overview
NameCN188527
Unique NameCN188527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9798 contig Csv1_Contig9798:60..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.518e-67
Identity = 120/155 (77.42%), Postives = 136/155 (87.74%), Query Frame = 3
Query:  249 VRASAEVA-DLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            V+++AEV  + QSK+T+KVYFD+S+GNPVGKLAGRIVIGLYGDDVPQT ENFRALCTGEKGFGYKGSTFHRVI+DFMIQ             S+YGRTFKDENFKLSH+GPGV+SMANAGPNTNGSQFFICT+KT WLD RHVVFGQV+EGM++V
Sbjct:   74 VQSNAEVVTEPQSKITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFGYKGSTFHRVIRDFMIQGGDFEKGNGTGGKSVYGRTFKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVV 228          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CP20C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.480e-55
Identity = 103/157 (65.61%), Postives = 122/157 (77.71%), Query Frame = 3
Query:  240 RSLVRASAEVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +S+     EV + Q+KVTNKVYFDV IG   G++AGRIV+GL+G+ VP+T ENFRALCTGEK +GYKGS+FHR+IKDFMIQ             SIYG  F+DENF L H GPG++SMANAGPNTNGSQFFICTVKT WLD +HVVFGQV+EGM +V
Sbjct:   77 KSMAAEEEEVIEPQAKVTNKVYFDVEIG---GEVAGRIVMGLFGEVVPKTVENFRALCTGEKKYGYKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGAKFEDENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGQVIEGMKLV 230          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CYPB_VICFA (Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.474e-52
Identity = 97/152 (63.82%), Postives = 118/152 (77.63%), Query Frame = 3
Query:  255 ASAEVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            A  EVA+LQ+KVT+K++FD+ IG   G+ AGRIVIGL+GD VP+T ENF+ L TG KG+GY+GS FHR+I +FMIQ             SIYG  F+DE+F L H+GPGV+SMANAGPNTNGSQFFICTV TPWLD RHVVFG V+EG+D+V
Sbjct:   69 AQGEVAELQAKVTSKIFFDIEIG---GESAGRIVIGLFGDAVPKTVENFKTLSTGAKGYGYQGSFFHRIIPNFMIQGGDFTEGNGTGGVSIYGSKFEDESFDLKHVGPGVLSMANAGPNTNGSQFFICTVPTPWLDNRHVVFGHVIEGLDVV 217          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIB_ORPSP (Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.192e-48
Identity = 96/147 (65.31%), Postives = 108/147 (73.47%), Query Frame = 3
Query:  270 ADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            A    KVTNKVYFD+  G+   K  GRIV+GLYG+ VP+T ENFRAL TGEKG+GYK S FHRVIKDFMIQ             SIYG  F DENFKL H GPG++SMANAG +TNGSQFFI TV T WLD RHVVFG+V+EGMD+V
Sbjct:   22 ASTNPKVTNKVYFDIKQGD---KDLGRIVLGLYGEVVPKTVENFRALATGEKGYGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFADENFKLRHTGPGILSMANAGRDTNGSQFFITTVTTSWLDGRHVVFGKVIEGMDVV 165          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.365e-47
Identity = 96/164 (58.54%), Postives = 108/164 (65.85%), Query Frame = 3
Query:  219 PTRKMGTRSLVRASAEVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            P R    R+  + S + +   S     VY DV      GK  GR+V+ L  D VP+TAENFRALCTGEKGFGYKGSTFHRVI  FM Q             SIYG  F DENF L H+GPGV+SMANAGPNTNGSQFFICT+KT WLD +HVVFG V EGMD+V
Sbjct:   21 PLRLPAARACSKGSGDPSSSSSSGNPLVYLDVDAN---GKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVV 181          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIB_CRYNE (Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans GN=CPR2 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.395e-47
Identity = 95/147 (64.63%), Postives = 108/147 (73.47%), Query Frame = 3
Query:  288 VTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEK------GFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +TNKVYFD+  G   GK  GRIV+GLYG  VP+TAENFRAL TG+       G+GY+GS+FHR+IK+FMIQ             SIYG  F DENFKL H GPGV+SMANAG +TNGSQFFICTVKT WLD RHVVFG VLEGMD+V
Sbjct:   43 ITNKVYFDIEHG---GKPLGRIVMGLYGKTVPKTAENFRALATGKNSDGEDLGYGYEGSSFHRIIKNFMIQGGDFTKGDGTGGKSIYGSKFPDENFKLKHTGPGVLSMANAGRDTNGSQFFICTVKTAWLDNRHVVFGHVLEGMDVV 186          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIB_EMENI (Peptidyl-prolyl cis-trans isomerase B OS=Emericella nidulans GN=cpr2 PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.740e-47
Identity = 94/142 (66.20%), Postives = 106/142 (74.65%), Query Frame = 3
Query:  285 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            K+TNKVYFD+  G+   +  GRIV+GLYG  VP+TAENFRAL TGEKGFGY+GS FHRVIKDFMIQ             SIYG  FKDENFKL H   G++SMANAG +TNGSQFFI T  TPWLD +HVVFG+VLEG DIV
Sbjct:   31 KITNKVYFDIQHGD---ESLGRIVLGLYGKTVPETAENFRALATGEKGFGYEGSNFHRVIKDFMIQGGDFTRGDGTGGKSIYGAKFKDENFKLRHTKTGLLSMANAGKDTNGSQFFITTAVTPWLDGKHVVFGEVLEGYDIV 169          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIB_ASPNG (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus niger GN=cypB PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.670e-46
Identity = 93/142 (65.49%), Postives = 107/142 (75.35%), Query Frame = 3
Query:  285 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            K+T+KV+FD+  G+   K  GR+V+GLYG  VP+TAENFRAL TGEKGFGY+GSTFHRVIKDFMIQ             SIYG  F DENFKL H   G++SMANAG +TNGSQFFI TV TPWLD RHVVFG+VLEG +IV
Sbjct:   32 KITSKVFFDIEHGD---KPLGRVVLGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKDFMIQGGDFTRGDGTGGKSIYGEKFADENFKLRHTRKGLLSMANAGKDTNGSQFFITTVPTPWLDGRHVVFGEVLEGYEIV 170          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIB_CHICK (Peptidyl-prolyl cis-trans isomerase B OS=Gallus gallus GN=PPIB PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.721e-46
Identity = 94/142 (66.20%), Postives = 106/142 (74.65%), Query Frame = 3
Query:  285 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            KVT KV+FD+ +G    + AGR+VIGL+G  VP+T ENF AL TGEKGFG+KGS FHRVIKDFMIQ             SIYG  F DENFKL H GPG VSMANAG +TNGSQFFI TVKT WLD +HVVFG+VLEGMD+V
Sbjct:   32 KVTAKVFFDLRVGE---EDAGRVVIGLFGKTVPKTVENFVALATGEKGFGFKGSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGDRFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVV 170          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIB_ASPFU (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus fumigatus GN=cpr2 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.859e-46
Identity = 95/156 (60.90%), Postives = 110/156 (70.51%), Query Frame = 3
Query:  243 SLVRASAEVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +LV A         K+T+KV+FD+  G+   K  GRIV+GLYG  VP+TAENFRAL TGEKGFGY+GSTFHRVIK FMIQ             SIYG  F DENFKL H   G++SMANAG +TNGSQFFI TV TPWLD RHVVFG+VLEG ++V
Sbjct:   19 ALVHAEETKEPRGPKITSKVFFDIEHGD---KPLGRIVLGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKSFMIQGGDFTRGDGTGGKSIYGEKFADENFKLRHTRKGLLSMANAGKDTNGSQFFITTVPTPWLDGRHVVFGEVLEGYEVV 171          
The following BLAST results are available for this feature:
BLAST of CN188527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
CP20B_ARATH8.518e-6777.42Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]
CP20C_ARATH7.480e-5565.61Peptidyl-prolyl cis-trans isomerase CYP20-3, chlor... [more]
CYPB_VICFA3.474e-5263.82Peptidyl-prolyl cis-trans isomerase, chloroplastic... [more]
PPIB_ORPSP5.192e-4865.31Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyc... [more]
PPIF_HUMAN3.365e-4758.54Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIB_CRYNE4.395e-4764.63Peptidyl-prolyl cis-trans isomerase B OS=Cryptococ... [more]
PPIB_EMENI5.740e-4766.20Peptidyl-prolyl cis-trans isomerase B OS=Emericell... [more]
PPIB_ASPNG1.670e-4665.49Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
PPIB_CHICK3.721e-4666.20Peptidyl-prolyl cis-trans isomerase B OS=Gallus ga... [more]
PPIB_ASPFU4.859e-4660.90Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006D20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188527 ID=CN188527; Name=CN188527; organism=Citrus sinensis; type=EST; length=710bp
GCGGTTCCATTCCATCAATGGCGGCAGCGGCTTCATTCGCAGCCCAGATA
AATGTAGGCTGGGTCTCAGGCCCACTTCAACTGAACAAAGCTCTCAGTCC
CTCGCGTAATGCAATCGAGATACCCAGAAAATCTTCTTCATTCCTATCAA
ATGCTTCATCATCCTGCTCCAGCTTCTTCTCCCGTCCGTTGACTCCCGTT
CCCCCTCTCACTCATTTTCCCACCAGGAAAATGGGTACGCGTAGCCTTGT
TCGGGCCAGTGCTGAGGTAGCTGATTTACAATCGAAAGTTACCAATAAAG
TTTATTTCGATGTGAGCATTGGGAATCCAGTAGGAAAGCTTGCTGGAAGA
ATCGTGATTGGATTGTACGGTGATGATGTGCCCCAAACGGCAGAGAACTT
CCGTGCTTTATGCACAGGAGAGAAGGGCTTTGGTTACAAAGGTTCCACAT
TCCATCGTGTTATCAAAGATTTCATGATCCAAGGAGGAGACTTTGATAAA
GGCAATGGAACTGGAGGTAAAAGTATATACGGCCGTACATTCAAAGATGA
GAACTTCAAATTGTCGCATATTGGACCAGGAGTAGTTAGTATGGCAAATG
CAGGTCCCAACACTAATGGCAGCCAATTTTTCATTTGTACGGTCAAGACA
CCATGGCTAGATCAGAGGCATGTTGTCTTTGGGCAAGTTTTGGAGGGCAT
GGACATTGTT
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