CN188526

Overview
NameCN188526
Unique NameCN188526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13620 contig Csv1_Contig13620:64..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN188526 vs. ExPASy Swiss-Prot
Match: CAP16_ARATH (Putative clathrin assembly protein At4g40080 OS=Arabidopsis thaliana GN=At4g40080 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.812e-16
Identity = 66/187 (35.29%), Postives = 95/187 (50.80%), Query Frame = -3 
Query:  229 HKDK-EEKIFALLSSDLLIEIDALVGFVQEISNVPNSLHLQRNNLVYEIVRLVSEDYRLIQREISLRVVELDERMTSLSVDQLTLFMSALKKFEDCKERLSLLFVNRKKN---DGLWHLIGETKMKIETMMNKKAE-EMALVRIMKRDETREWSR----------QPFRFTSDGSWLGLDRVSLTVS 744
            HK++ EE + +L +SDLL EIDALVG ++E   +P+       +L  +I +LV EDY     E+  R  E  ER  +LS       + ALK+ E CKERLS +     K    DG W L+ E K  I  + +   + E ++V   KRD+  E +R           P RF+S G +  +DR +  VS
Sbjct:  175 HKEEYEEMVSSLTNSDLLREIDALVGLLEEACKIPDLPFSGGKSLADKITQLVGEDYVSSINELYTRFNEFKERSNTLSFGDTIELVCALKRLESCKERLSEICHGNWKRGWIDGFWGLVLEVKGIIGNLEDNYGQIEKSIVGFGKRDKGYESARFTDRLIIGYSNPVRFSS-GRFSNVDRFNFPVS 360
The following BLAST results are available for this feature:
BLAST of CN188526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CAP16_ARATH5.812e-1635.29Putative clathrin assembly protein At4g40080 OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006D20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188526 ID=CN188526; Name=CN188526; organism=Citrus sinensis; type=EST; length=755bp
TTTTTTTTTTTTTTTTTATAGCACCACAAAAATCTAAACATCACGAATTA
TGAAGAAATTCCCATTGTATTACATTAGGGAAACCCGGTTACGTCCATAT
TCTATTTTCTATTAACAAAGTATTATTTTTTCACACCTAATTAACATAAA
ATTCAGTCAAACAAAATAACCGATCTATGCAGCAGCAAAATGAGAAACCG
GGTTCATTTGTACAGGTCATCTAACTGTAGATACAGTTAAAGAAACCCGG
TCCAAGCCCAACCATGAACCGTCGGATGTGAACCGGAACGGCTGTCGGGA
CCACTCCCTTGTCTCGTCCCTTTTCATTATTCTCACTAAAGCCATCTCCT
CTGCCTTTTTATTCATCATCGTCTCGATTTTCATCTTTGTTTCGCCAATC
AGGTGCCACAGTCCATCATTCTTCTTCCTATTCACAAATAACAATGACAA
TCTCTCTTTACAATCTTCAAATTTCTTCAAAGCACTCATGAACAAAGTCA
ACTGATCAACACTTAAACTCGTCATTCTCTCATCAAGTTCAACAACTCGG
AGGGAGATTTCACGTTGTATTAGTCTGTAATCTTCACTGACCAATCTCAC
AATCTCGTACACCAGATTGTTCCTTTGAAGATGCAACGAGTTGGGCACGT
TGCTTATCTCTTGAACAAACCCTACAAGAGCATCTATCTCTATCAACAAA
TCTGAGCTTAACAAAGCAAAAATCTTCTCTTCTTTGTCCTTATGATTCTT
CTTGG
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