CN188512

Overview
NameCN188512
Unique NameCN188512
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length496
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5271 contig Csv1_Contig5271:410..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN188512 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 8.583e-46
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = -3 
Query:  213 ALFKAKLLLAPVADGISLSIGRRGYAAAAPLGTISRTGIMEKNDLTPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 494
            +LFKAKLLLAPVADGISLSI RRGYAAAAPLGTISRTGIMEKNDL PAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:    4 SLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97
[Close]
BLAST of CN188512 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.090e-20
Identity = 52/96 (54.17%), Postives = 64/96 (66.67%), Query Frame = -3 
Query:  216 KLLLAPVADGISLSIGRRGYAAAAPLG---TISRTGIMEKNDLTPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 479
            KLL A + DG+ +SI RRGY+ A P     +  R G M K +   A++E S +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:    9 KLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104
[Close]
BLAST of CN188512 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.797e-18
Identity = 49/96 (51.04%), Postives = 62/96 (64.58%), Query Frame = -3 
Query:  216 KLLLAPVADGISLSIGRRGYAAAAPLG---TISRTGIMEKNDLTPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 479
            K L A V D + +SI RRGY+ A P     +  R G M K +   A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:    9 KFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104
The following BLAST results are available for this feature:
BLAST of CN188512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI8.583e-4696.81Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI8.090e-2054.17Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI5.797e-1851.04Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188512 ID=CN188512; Name=CN188512; organism=Citrus sinensis; type=EST; length=496bp
TTTTTTTTTGATAAGGCATTCTTTACTTTTATTGACAAGTTAATAGAGAC
CATTTCATGGAAATGCACTATTAAAAGTTGTAAATAACAGTTGATATCAA
AACAACAGCAAAGACTTTAGAGTGAGTCAAAATTGCTACTGTAACAACAT
CACTTAAAAGTTAACCCACCGCTAACAGCAAAGGATCTGCTGCTATGCGC
GACCACTCCCTAGTGTGCCCTGACTTTGTGGTTCAACAGCATCTCTCGAA
GCTCTGCTGGATCAATCTCGACCGCCCGATTCTCCGGCCTGTAGTACCCA
GTGATGGGATCTGGGGCCCAGGCAGAAGAGGCCCCAGAATCCTCTCTCAC
CGCAGGCGTCAAATCATTTTTCTCCATGATACCAGTCCGAGATATGGTTC
CCAAGGGTGCTGCTGCAGCATATCCTCTCCTGCCAATGGAGAGCGAGATG
CCATCAGCAACAGGAGCAAGAAGAAGCTTAGCTTTGAAGAGAGCCT
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