CN188500

Overview
NameCN188500
Unique NameCN188500
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188500_ssr110 microsatellite CN188500_ssr110:110..121. BLAST: Citrus ESTs to Prunus persica proteins V1
CN188500_ssr70 microsatellite CN188500_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5667 contig Csv1_Contig5667:19..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188500 vs. ExPASy Swiss-Prot
Match: UPTG1_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1 PE=1 SV=2)

HSP 1 Score: 385.185 bits (988), Expect = 1.876e-106
Identity = 180/194 (92.78%), Postives = 186/194 (95.88%), Query Frame = 1 
Query:  127 AVPLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPLERNTRFVDAIMTIP 708
            A PLLKDELDIVIPTIRNLDFLE WRPFFQ YHLIIVQDGDPSK IKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKY+YTIDDDCFVAKDPSGK+INALEQHI+NLL PSTP FFNTLYDPYRDGADFVRGYPFS+REG PTAVSHGLWLNIPDYDAPTQLVKP ERNTR+VDA+MTIP
Sbjct:    4 ATPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKIIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYRDGADFVRGYPFSMREGAPTAVSHGLWLNIPDYDAPTQLVKPHERNTRYVDAVMTIP 197
[Close]
BLAST of CN188500 vs. ExPASy Swiss-Prot
Match: UPTG_PEA (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Pisum sativum GN=UPTG PE=1 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 3.200e-106
Identity = 179/192 (93.23%), Postives = 186/192 (96.88%), Query Frame = 1 
Query:  133 PLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPLERNTRFVDAIMTIP 708
            PLLKDELDIVIPTIRNLDFLE WRPFF+ YHLIIVQDGDPSK IKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKY+YTIDDDCFVAKDP+G EINALEQHI+NLLSPSTPFFFNTLYDPYR+G DFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKP ERNTRFVDA++TIP
Sbjct:    9 PLLKDELDIVIPTIRNLDFLEMWRPFFEQYHLIIVQDGDPSKVIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGHEINALEQHIKNLLSPSTPFFFNTLYDPYREGTDFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPHERNTRFVDAVLTIP 200
[Close]
BLAST of CN188500 vs. ExPASy Swiss-Prot
Match: UPTG_MAIZE (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Zea mays GN=UPTG PE=1 SV=2)

HSP 1 Score: 383.259 bits (983), Expect = 7.128e-106
Identity = 179/195 (91.79%), Postives = 187/195 (95.90%), Query Frame = 1 
Query:  124 PAVPLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPLERNTRFVDAIMTIP 708
            P+ PLLKDELDIVIPTIRNLDFLE WR FFQ YHLIIVQDGDP+KTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKY+YTIDDDCFVAKDPSGK+INALEQHI+NLLSPSTPFFFNTLYDPYR+GADFVRGYPFSLREG  TAVSHGLWLNIPDYDAPTQLVKP ERN R+VDA+MTIP
Sbjct:   13 PSTPLLKDELDIVIPTIRNLDFLEMWRAFFQPYHLIIVQDGDPTKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGAHTAVSHGLWLNIPDYDAPTQLVKPKERNERYVDAVMTIP 207
[Close]
BLAST of CN188500 vs. ExPASy Swiss-Prot
Match: UPTG2_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1)

HSP 1 Score: 377.481 bits (968), Expect = 3.911e-104
Identity = 176/192 (91.67%), Postives = 183/192 (95.31%), Query Frame = 1 
Query:  133 PLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPLERNTRFVDAIMTIP 708
            PLLKDELDIVIPTIRNLDFLE WRPFFQ YHLIIVQDGDPSK I VPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKY+YTIDDDCFVAKDPSGK+INALEQHI+NLL PSTP FFNTLYDPYR+GADFVRGYPFS+REG  TAVSHGLWLNIPDYDAPTQLVKP ERNTR+VDA+MTIP
Sbjct:   10 PLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKIINVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYREGADFVRGYPFSMREGAATAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDAVMTIP 201
The following BLAST results are available for this feature:
BLAST of CN188500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UPTG1_SOLTU1.876e-10692.78Alpha-1,4-glucan-protein synthase [UDP-forming] 1 ... [more]
UPTG_PEA3.200e-10693.23Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG_MAIZE7.128e-10691.79Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG2_SOLTU3.911e-10491.67Alpha-1,4-glucan-protein synthase [UDP-forming] 2 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188500 ID=CN188500; Name=CN188500; organism=Citrus sinensis; type=EST; length=709bp
AGTCTACGGTCTATCTCTCCTCTCCTCTTGTTCTTCTTCTTACACAAATC
AGAGTCTCTCATTTTTCTTTTTCTTTCTTTCTTTTTCTGAAACAAAATGG
CTGCGGCAGCAACAACAACAAGGCCGGCTGTGCCGCTGCTGAAAGACGAG
CTGGACATCGTGATCCCCACGATCCGAAACTTGGATTTCTTGGAGCAGTG
GAGGCCGTTTTTTCAGGCCTATCATTTGATCATCGTTCAGGATGGTGACC
CTTCGAAGACCATCAAAGTCCCTGAGGGATTTGACTACGAGCTCTATAAT
CGTAACGATATTAACCGGATTCTGGGTCCCAAGGCTTCTTGCATATCCTT
CAAGGACTCTGCCTGCAGGTGCTTTGGCTACATGGTGTCCAAGAAGAAGT
ATGTTTACACCATTGATGACGATTGCTTTGTTGCTAAAGACCCATCTGGA
AAAGAAATTAATGCACTGGAGCAGCACATAAGGAACCTGCTGAGTCCATC
CACCCCATTTTTCTTTAACACTCTGTACGACCCATACCGTGATGGAGCTG
ACTTCGTTCGCGGATATCCATTCAGTCTTCGTGAGGGTGTCCCCACTGCT
GTTTCTCATGGCCTCTGGCTCAACATCCCAGATTATGATGCTCCCACCCA
GCTTGTCAAGCCTCTTGAGAGGAACACTAGGTTTGTGGATGCAATTATGA
CAATACCAA
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