CN188498

Overview
NameCN188498
Unique NameCN188498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9377 contig Csv1_Contig9377:1091..1761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188498 vs. ExPASy Swiss-Prot
Match: MPPA_SOLTU (Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.388e-68
Identity = 128/186 (68.82%), Postives = 154/186 (82.80%), Query Frame = 3
Query:    9 ELPGGWXKDKAFKTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAV 566
            E+PGGW  +K   TLTVLQML+              MYSRLY RVLN++PQ+ +FSAFS+IYN++G+FGIQGTT SDF  +A+D+A +ELI+VA P EVDQVQL+RAKQ+TKSAILMNLESRMV SEDIGRQ+LTYGER PVEHFLK ++ V+AKDIASV QKL+SSPLTMASYGDV+++PSYDAV
Sbjct:  312 EVPGGWMSEKESMTLTVLQMLMGGGGSFSAGGPGKGMYSRLYLRVLNQYPQIHAFSAFSSIYNNTGLFGIQGTTSSDFGPQAVDVAVKELIAVANPSEVDQVQLNRAKQATKSAILMNLESRMVASEDIGRQLLTYGERNPVEHFLKAIDAVSAKDIASVVQKLISSPLTMASYGDVLSLPSYDAV 497          
BLAST of CN188498 vs. ExPASy Swiss-Prot
Match: MPPA1_ARATH (Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.860e-51
Identity = 104/186 (55.91%), Postives = 136/186 (73.12%), Query Frame = 3
Query:    9 ELPGGWXKDKAFKTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAV 566
            E+PG W  +K   T TVLQML+              M+S LYRRVLNE+ +VQS +AF++I+N +G+FGI G +   F +KAI+LAA+EL  VA  G+V+Q  LDRAK +TKSA+LMNLESRM+ +EDIGRQ+LTYGERKPV+ FLK+V+ +T KDIA    K++S PLTM S+GDV+ VPSYD +
Sbjct:  315 EVPG-WNNEKEAVTATVLQMLMGGGGSFSAGGPGKGMHSWLYRRVLNEYQEVQSCTAFTSIFNDTGLFGIYGCSSPQFAAKAIELAAKELKDVAG-GKVNQAHLDRAKAATKSAVLMNLESRMIAAEDIGRQILTYGERKPVDQFLKSVDQLTLKDIADFTSKVISKPLTMGSFGDVLAVPSYDTI 498          
BLAST of CN188498 vs. ExPASy Swiss-Prot
Match: MPPA2_ARATH (Probable mitochondrial-processing peptidase subunit alpha-2 OS=Arabidopsis thaliana GN=At3g16480 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.222e-48
Identity = 100/186 (53.76%), Postives = 135/186 (72.58%), Query Frame = 3
Query:    9 ELPGGWXKDKAFKTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAV 566
            E+PG W  +K     TVLQML+              M+S LY R+LN+  Q QS +AF++++N++G+FGI G T  +F S+ I+L A E+ +VA  G+V+Q  LDRAK +TKSAILMNLESRM+ +EDIGRQ+LTYGERKPV+ FLKTV+ +T KDIA    K+++ PLTMA++GDV+NVPSYD+V
Sbjct:  311 EVPG-WNNEKEAIIATVLQMLMGGGGSFSAGGPGKGMHSWLYLRLLNQHQQFQSCTAFTSVFNNTGLFGIYGCTSPEFASQGIELVASEMNAVAD-GKVNQKHLDRAKAATKSAILMNLESRMIAAEDIGRQILTYGERKPVDQFLKTVDQLTLKDIADFTSKVITKPLTMATFGDVLNVPSYDSV 494          
BLAST of CN188498 vs. ExPASy Swiss-Prot
Match: MPPA_NEUCR (Mitochondrial-processing peptidase subunit alpha OS=Neurospora crassa GN=mpp PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 9.125e-20
Identity = 58/170 (34.12%), Postives = 87/170 (51.18%), Query Frame = 3
Query:   33 DKAFKTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATP---GEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYG 533
            D     L  LQ LL              MYSRLY  VLN+   V+S  AF++ Y  SG+FGI  +         + +  REL ++ T      + ++++ RAK   +S++LMNLESRMV  ED+GRQV  +G + PV    + +  +T KD+  VA++++      A  G
Sbjct:  370 DDDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTNVLNQHGWVESCVAFNHSYTDSGLFGIAASCYPGRTLPMLQVMCRELHALTTDHGYSALGELEVSRAKNQLRSSLLMNLESRMVELEDLGRQVQVHGRKIPVREMTRRINELTVKDLRRVAKRVVGGMANNAGQG 539          
BLAST of CN188498 vs. ExPASy Swiss-Prot
Match: MPPA_PONAB (Mitochondrial-processing peptidase subunit alpha OS=Pongo abelii GN=PMPCA PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 54/178 (30.34%), Postives = 93/178 (52.25%), Query Frame = 3
Query:   33 DKAFKTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAV 566
            ++ F    VL M++              M+SRLY  VLN    + + +++ + Y  +G+  I  +     V + +++  +E I ++  G VD V+L+RAK    S ++MNLESR V+ ED+GRQVL    RK        +  V  +D+  VA K+L     +A+ GD+ ++P+Y+ +
Sbjct:  331 EEDFIPFAVLNMMMGGGGSFSAGGPGKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMS--GTVDAVELERAKTQLTSMLMMNLESRPVIFEDVGRQVLATRSRKLPHELCTLIRNVKPEDVKRVASKMLRGKPAVAALGDLTDLPTYEHI 506          
BLAST of CN188498 vs. ExPASy Swiss-Prot
Match: MPPA_HUMAN (Mitochondrial-processing peptidase subunit alpha OS=Homo sapiens GN=PMPCA PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 54/178 (30.34%), Postives = 92/178 (51.69%), Query Frame = 3
Query:   33 DKAFKTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAV 566
            ++ F    VL M++              M+SRLY  VLN    + + +++ + Y  +G+  I  +     V + +++  +E I +   G VD V+L+RAK    S ++MNLESR V+ ED+GRQVL    RK        +  V  +D+  VA K+L     +A+ GD+ ++P+Y+ +
Sbjct:  331 EEDFIPFAVLNMMMGGGGSFSAGGPGKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMG--GTVDTVELERAKTQLTSMLMMNLESRPVIFEDVGRQVLATRSRKLPHELCTLIRNVKPEDVKRVASKMLRGKPAVAALGDLTDLPTYEHI 506          
BLAST of CN188498 vs. ExPASy Swiss-Prot
Match: MPPA_BLAEM (Mitochondrial-processing peptidase subunit alpha OS=Blastocladiella emersonii PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.529e-19
Identity = 53/162 (32.72%), Postives = 87/162 (53.70%), Query Frame = 3
Query:   51 LTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGD 536
            ++ LQ+L+              MYSRLY  VLN +  ++S +AF + Y+ + +FGI  +    F     ++ A E + +A    +   ++ RAK   KS++LMNLES+++  EDIGRQVL   +R      +  +  VT  D+  VA+ L++ P TM + G+
Sbjct:  279 VSTLQVLMGGGGAFSAGGPGKGMYSRLYTNVLNRYRWMESCAAFQHAYSSTSLFGISASCVPSFNPHLCNVLAGEFVHMAR--NLSDEEVARAKNQLKSSLLMNLESQVITVEDIGRQVLAQNQRLEPLELVNNISAVTRDDLVRVAEALVAKPPTMVAVGE 438          
BLAST of CN188498 vs. ExPASy Swiss-Prot
Match: MPPA_BOVIN (Mitochondrial-processing peptidase subunit alpha OS=Bos taurus GN=PMPCA PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.915e-19
Identity = 55/175 (31.43%), Postives = 90/175 (51.43%), Query Frame = 3
Query:   42 FKTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAV 566
            F    VL M++              M++RLY  VLN    + + +++ + Y  +G+  I  +     V + +++  RE + +A  G VD V+L+RAK    S ++MNLE+R V+ ED+GRQVL    RK        +  V  +DI  VA K+L     +A+ GD+  +P+Y+ V
Sbjct:  334 FIPFAVLNMMMGGGGSFSAGGPGKGMFTRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIVTREFVLMA--GTVDVVELERAKTQLTSMLMMNLEARPVIFEDVGRQVLATRSRKLPHELCALIRDVKPEDIKRVASKMLRGKPAVAALGDLSELPAYEHV 506          
BLAST of CN188498 vs. ExPASy Swiss-Prot
Match: MPPA_YEAST (Mitochondrial-processing peptidase subunit alpha OS=Saccharomyces cerevisiae GN=MAS2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.725e-19
Identity = 54/163 (33.13%), Postives = 91/163 (55.83%), Query Frame = 3
Query:   51 LTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEV--DQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYG 533
            L  LQ LL              MYSRLY  VLN++  V++  AF++ Y+ SG+FGI  +       +A+++ A+++ +     ++   + ++ RAK   KS++LMNLES++V  ED+GRQVL +G + PV   +  +E +   DI+ VA+ + +  +  A  G
Sbjct:  276 LATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVAEMIFTGNVNNAGNG 438          
BLAST of CN188498 vs. ExPASy Swiss-Prot
Match: MPPA_RAT (Mitochondrial-processing peptidase subunit alpha OS=Rattus norvegicus GN=Pmpca PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.248e-18
Identity = 54/178 (30.34%), Postives = 91/178 (51.12%), Query Frame = 3
Query:   33 DKAFKTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAV 566
            ++ F    VL M++              M+SRLY  VLN    + + +++ + Y  +G+  I  +     V + +++  +E I +     VD V+L+RAK    S ++MNLESR V+ ED+GRQVL    RK        +  V  +DI  VA K+L     +A+ GD+ ++P+Y+ +
Sbjct:  330 EEDFIPFAVLNMMMGGGGSFSAGGPGKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMGRT--VDLVELERAKTQLMSMLMMNLESRPVIFEDVGRQVLATHSRKLPHELCTLIRNVKPEDIKRVASKMLRGKPAVAALGDLTDLPTYEHI 505          
The following BLAST results are available for this feature:
BLAST of CN188498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
MPPA_SOLTU1.388e-6868.82Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA1_ARATH5.860e-5155.91Probable mitochondrial-processing peptidase subuni... [more]
MPPA2_ARATH1.222e-4853.76Probable mitochondrial-processing peptidase subuni... [more]
MPPA_NEUCR9.125e-2034.12Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_PONAB2.655e-1930.34Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_HUMAN3.467e-1930.34Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_BLAEM4.529e-1932.72Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_BOVIN5.915e-1931.43Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_YEAST7.725e-1933.13Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_RAT2.248e-1830.34Mitochondrial-processing peptidase subunit alpha O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C15_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188498 ID=CN188498; Name=CN188498; organism=Citrus sinensis; type=EST; length=671bp
ATTTAAGGGAACTTCCTGGTGGNTGGNATAAGGATAAGGCCTTTAAGACT
TTGACAGTTCTCCAGATGCTTTTGGGAGGAGGTGGATCATTCTCAGCTGG
GGGCCCTGGAACCGGAATGTACTCAAGGCTGTATCGTCGTGTGTTGAATG
AGTTCCCGCAAGTTCAGTCCTTTTCAGCATTCAGCAACATCTACAATCAT
TCTGGCATGTTTGGAATCCAGGGTACAACTGGCTCTGATTTCGTATCAAA
AGCTATTGATTTAGCAGCGAGGGAGCTTATTTCTGTGGCAACTCCAGGAG
AAGTTGATCAAGTACAGCTAGACCGCGCCAAACAGTCAACCAAGTCAGCT
ATTTTGATGAATTTGGAATCAAGAATGGTTGTTTCCGAAGACATAGGTAG
ACAAGTTCTGACATATGGTGAGAGGAAACCCGTGGAGCATTTCTTGAAGA
CTGTGGAAGGAGTTACAGCAAAGGATATTGCTTCCGTAGCACAGAAGCTT
CTTTCATCTCCTCTCACAATGGCATCATATGGAGATGTCATCAATGTCCC
AAGCTATGATGCAGTCAGCAGCAAGTTCAAGTCAAAATAAAATTGATTTT
TTTTCCTTTTTGGTATCAAACTGGGCAGGCTCCTTACCCGTTGTCTATAT
TGTTGTGCATCTGCATTCCGT
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