CN188486

Overview
NameCN188486
Unique NameCN188486
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188486_ssr56 microsatellite CN188486_ssr56:56..67. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2681 contig Csv1_Contig2681:22..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188486 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.523e-62
Identity = 131/215 (60.93%), Postives = 152/215 (70.70%), Query Frame = 2
Query:   71 LVSREARTSIARRNVAPCSVTLPATS---RKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQG-----TQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIP 691
            +VS  +RT+  +   AP SV  P +    RK A RL A   QA G+NKDTSVDVHV++ NQG     +  ERRPRR ALD+ PFGL+DP  P RTMRQM+DTMDRL EDTM FPG SR  G G++R PWDIK++ENEIKMRFDMPGL             LVIKGEH+ EE+G D SW G ++SSYDTRL LPDN +KDKVKAELKNGVL ISIP
Sbjct:   18 VVSATSRTNNKKTTTAPFSVCFPYSKCSVRKPASRLVA---QATGDNKDTSVDVHVSNNNQGGNNQGSAVERRPRRMALDVSPFGLLDPMSPMRTMRQMMDTMDRLFEDTMTFPG-SRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDSW-GRNYSSYDTRLSLPDNVDKDKVKAELKNGVLLISIP 227          
BLAST of CN188486 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.133e-60
Identity = 127/216 (58.80%), Postives = 150/216 (69.44%), Query Frame = 2
Query:   68 PLVSREARTSIARRN----VAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSG----NQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIP 691
            PLVS  +    ++ N     APCSV +P+  R+   RL A   +A G+NKDTSVDVH +S     NQGT  ERRP R ALD+ PFG++DP  P RTMRQM+DTMDRL EDTM FPGR+RA G G++RTPWDI ++ENEIKMRFDMPGL             LVIKGEH+ EE G D    G ++SSYDTRL LPDN  KDK+KAELKNGVL+ISIP
Sbjct:   10 PLVSNVSVGGTSKINNNKVSAPCSVFVPSM-RRPTTRLVA---RATGDNKDTSVDVHHSSAQGGNNQGTAVERRPTRMALDVSPFGVLDPMSPMRTMRQMIDTMDRLFEDTMTFPGRNRASGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHSWGRNYSSYDTRLSLPDNVVKDKIKAELKNGVLFISIP 221          
BLAST of CN188486 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.061e-58
Identity = 111/169 (65.68%), Postives = 135/169 (79.88%), Query Frame = 2
Query:  191 GGENKDTSVDV-HVNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAE-EAGGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIP 691
            GG+NKD SV+V HV+ G+QGT  E++PRRTA+DI PFG++DP  P R+MRQ+LDTMDR+ EDTM FPGR+   GGG++R PWDIK+EE+EI+MRFDMPGL             LVIKG H++E E GGD SWS  ++SSYDTRL+LPDNCEKDKVKAELKNGVLYI+IP
Sbjct:    1 GGDNKDNSVEVQHVSKGDQGTAVEKKPRRTAMDISPFGILDPWSPMRSMRQILDTMDRVFEDTMTFPGRNI--GGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDSWSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVLYITIP 167          
BLAST of CN188486 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.979e-58
Identity = 115/211 (54.50%), Postives = 152/211 (72.04%), Query Frame = 2
Query:   68 PLVSREARTSIARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGE--NKDTSVDVH-VNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIP 691
            P++S++  +S+  ++  PC  + P   +     L+ VRAQAGG+  NKD SV+VH VN  +QGT  ER+PRR+++DI PFGL+DP  P R+MRQMLDTMDR+ ED +  PGR+   GGG++R PW+IK+EE+EI+MRFDMPG+             LVIK +HR EE GG+  WS  S+S YDTRL+LPDNCEK+KVKAELK+GVLYI+IP
Sbjct:   13 PILSQKPGSSV--KSTPPCMASFPLRRQLPRLGLRNVRAQAGGDGDNKDNSVEVHRVNKDDQGTAVERKPRRSSIDISPFGLLDPWSPMRSMRQMLDTMDRIFEDAITIPGRNI--GGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHR-EENGGEDCWSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVLYITIP 218          
BLAST of CN188486 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.316e-52
Identity = 112/201 (55.72%), Postives = 135/201 (67.16%), Query Frame = 2
Query:   95 SIARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQGTQAERRPR-RTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGG-GQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIP 691
            S++ ++  P SV+ P   RK   R   +RAQ   EN    V      GNQG+  E+RP+ R  +D+ PFGL+DP  P RTMRQMLDTMDR+ EDTM   GR+R G G  ++R PWDIKEEE+EIKMRFDMPGL             LVIKGE + E++  D SWSG S SSY TRLQLPDNCEKDK+KAELKNGVL+I+IP
Sbjct:   21 SVSSKSATPFSVSFP---RKIPSR---IRAQDQRENSIDVVQQGQQKGNQGSSVEKRPQQRLTMDVSPFGLLDPLSPMRTMRQMLDTMDRMFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDS--DDSWSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIP 213          
BLAST of CN188486 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.037e-46
Identity = 106/217 (48.85%), Postives = 124/217 (57.14%), Query Frame = 2
Query:   71 LVSREARTSIARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHV----NSGNQ-GTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEA-----GGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIP 691
            LVSR   +  AR  +       PA    G        A A  EN+D SVDV V    N+GNQ G   +RRPRR   DI PFGL+DP  P RTMRQMLDTMDRL +D + FP R       + R PWDI E+E E+KMRFDMPGL             LVI+GEH+ E       GGD  W   S SSYD RL LPD C+K +V+AELKNGVL +S+P
Sbjct:   10 LVSR--LSPAARLPIRAWRAARPAPLSTGGRTRPLSVASAAQENRDNSVDVQVSQAQNAGNQQGNAVQRRPRRAGFDISPFGLVDPMSPMRTMRQMLDTMDRLFDDAVGFPTRRSPAARARRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHKKEAGEGQGEGGDGWWKERSVSSYDMRLALPDECDKSQVRAELKNGVLLVSVP 224          
BLAST of CN188486 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.247e-43
Identity = 111/221 (50.23%), Postives = 135/221 (61.09%), Query Frame = 2
Query:   74 VSREARTSI--ARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKD-TSVDVHVNS--GNQ-GTQAERRPRRT-ALD-ILPFGLMDPSFPTRTMRQMLDTMDRLLEDT-MAFPGRSRAG-GGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEA-----GGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIP 691
            VS  AR  I  A R   P +V LP++ R      Q   A A  EN+D T+VDVHVN   GNQ G   +RRPRR+ ALD I PFGL+DP  P RTMRQMLDTMDR+ +D  + FP   R     G+VR PWD+ E++ E++MRFDMPGL             LVI+GEH+ EE       GD  W   S SSYD RL LPD C+K KV+AELKNGVL +++P
Sbjct:   11 VSPAARLPIRAAWRRARP-TVGLPSSGRAR----QLAVASAAQENRDNTAVDVHVNQDGGNQQGNAVQRRPRRSSALDGISPFGLVDPMSPMRTMRQMLDTMDRIFDDVALGFPATPRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALPDECDKSKVRAELKNGVLLVTVP 226          
BLAST of CN188486 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 75/208 (36.06%), Postives = 108/208 (51.92%), Query Frame = 2
Query:   74 VSREARTSIARRNVAPCSVTLPATSRKGAYRLQAVRA-QAGGENKDTSVDVHVNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIP 691
            + R   +SIA R+    SV  PA S +  +   AVR+    GEN D  VD++  S          PRR   D     + DP  PTR++ Q+L+ MD+ +E+ +     +R  G    R  WDIKE+++ + +R DMPGL             LVI+GE + EE GG+   SG     + +R+ LPD   K D++KAE+KNGVL + IP
Sbjct:    7 LKRLLSSSIAPRSR---SVLRPAVSSR-LFNTNAVRSYDDDGENGD-GVDLYRRSV---------PRRRG-DFFS-DVFDPFSPTRSVSQVLNLMDQFMENPLL--SATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGN--RRFTSRIGLPDKIYKIDEIKAEMKNGVLKVVIP 194          
BLAST of CN188486 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.004e-16
Identity = 52/131 (39.69%), Postives = 77/131 (58.78%), Query Frame = 2
Query:  302 LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIP 691
            ++DP  PTR++ QML+ MD++ E  +     +R  G   VR  W++KE+++ + +R DMPGL             LVI+GE   EE G D S  G  F+S   R++LP+   K D++KAE+KNGVL + IP
Sbjct:   70 ILDPFTPTRSLSQMLNFMDQVSEIPLV--SATRGMGASGVRRGWNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIRGEGETEE-GEDVSGDGRRFTS---RIELPEKVYKTDEIKAEMKNGVLKVVIP 194          
BLAST of CN188486 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 63/185 (34.05%), Postives = 92/185 (49.73%), Query Frame = 2
Query:  140 ATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIP 691
            A+S   ++   A+R Q    + D +VDV+ +S          PR    D+L   + DP  P R++ Q+L+ +D LL D       SR G        WD +E E+ + +R DMPGL             L IKGE  A+E+  +   SG  FSS   R+ LP+   K D +KAE+KNGVL +++P
Sbjct:   25 ASSASRSFNTNAMR-QYDQHSDDRNVDVYRHSF---------PRTRRDDLLLSDVFDPFSPPRSLSQVLNMVD-LLTDNPVLSAASRRG--------WDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIKGEEGAKES-EEKEKSGRRFSS---RIDLPEKLYKIDVIKAEMKNGVLKVTVP 186          
The following BLAST results are available for this feature:
BLAST of CN188486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HS22C_PETHY3.523e-6260.93Small heat shock protein, chloroplastic OS=Petunia... [more]
HS21C_SOLLC1.133e-6058.80Small heat shock protein, chloroplastic OS=Solanum... [more]
HS22C_SOYBN1.061e-5865.68Small heat shock protein, chloroplastic (Fragment)... [more]
HS21C_PEA8.979e-5854.50Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS25P_ARATH4.316e-5255.7225.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS21C_WHEAT6.037e-4648.85Small heat shock protein, chloroplastic OS=Triticu... [more]
HS26P_ORYSJ6.247e-4350.2326.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS23M_ARATH5.326e-1836.0623.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS235_ARATH1.004e-1639.6923.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS22M_PEA2.094e-1434.05Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006C07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188486 ID=CN188486; Name=CN188486; organism=Citrus sinensis; type=EST; length=691bp
AGGCTCAAGTGCTCAGAAAACAAAGTGAAAATAAATGGCTGCTACATTAT
CTATCTCATCATCATCACCCTTGGTATCGCGCGAGGCCAGGACCTCAATA
GCTAGGAGAAATGTGGCGCCATGCTCGGTAACCTTACCGGCAACGTCAAG
GAAAGGCGCCTATCGGCTACAAGCCGTGAGAGCTCAGGCTGGTGGGGAGA
ACAAGGATACTTCGGTTGACGTCCATGTTAATTCCGGTAACCAAGGAACC
CAAGCGGAGAGGAGGCCTCGAAGAACGGCTCTCGATATTTTACCTTTCGG
TTTGATGGATCCCTCGTTTCCAACGAGGACAATGCGGCAGATGCTGGACA
CAATGGACCGTCTATTAGAGGATACGATGGCTTTTCCGGGGAGGAGCCGG
GCTGGCGGGGGAGGCCAGGTGAGAACACCGTGGGACATCAAAGAGGAGGA
AAATGAGATCAAAATGAGATTTGACATGCCTGGACTCTCTAAGGAGGATG
TCAAAGTGTCGGTGGAAGATGATGTCCTTGTCATTAAAGGAGAGCACAGG
GCAGAAGAAGCTGGAGGTGATCCGAGTTGGTCTGGTGCAAGTTTTAGCTC
TTACGATACTCGTCTCCAGCTTCCTGATAACTGTGAGAAAGATAAGGTCA
AGGCAGAGCTCAAGAATGGTGTTCTTTACATTTCAATTCCT
back to top