CN188485

Overview
NameCN188485
Unique NameCN188485
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188485_ssr642 microsatellite CN188485_ssr642:642..653. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4990 contig Csv1_Contig4990:127..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.180e-65
Identity = 127/171 (74.27%), Postives = 137/171 (80.12%), Query Frame = -3
Query:  165 MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDR-------------APSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 638
            MST +KITLKSSDGE FE+DEAVALESQTIKHMIEDDC DNGIPLPNVTSKILSKVIEYCK+HVEA++  +              A    D+DLK WD++F+KVDQ TLFDLILAANYLNIK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP        ENQWAFE
Sbjct:    1 MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.484e-65
Identity = 123/159 (77.36%), Postives = 136/159 (85.53%), Query Frame = -3
Query:  165 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRAPSGV---DDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 632
            ++KKI LKSSDGE+FEV+EAVALESQTI HM+EDDC DNG+PLPNVTSKIL+KVIEYCK+HVEA+ S   A  G    DDDLKAWD DF+K+DQATLF+LILAANYLNIK+LLDLTCQTVADMIKGKTPEEIR TFNIKNDFTP        ENQWAFE
Sbjct:    2 SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.476e-56
Identity = 109/160 (68.12%), Postives = 127/160 (79.38%), Query Frame = -3
Query:  165 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKS----DDRAPSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 632
            T K I LKSSDGE+FE++EAVA++SQTIKHMIEDDCADNGIPLPNVT  IL+KVIEYCKKHVEA+       D   S  +D+LK WD++FVKVDQ TLFDLILAANYLNI  LLDLTC+ VAD ++GKTPE++R  FNIKND+TP        EN+WAFE
Sbjct:    4 TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.036e-53
Identity = 106/160 (66.25%), Postives = 122/160 (76.25%), Query Frame = -3
Query:  165 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASK----SDDRAPSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 632
            T K I LKSSDGE+FEV+EAVA+ESQTIKHMIEDDC DNGIPLPNVT  IL+KVIEYCKKHVEA+       D   S  + +LK WD DFVKVD  TLFDL+ AANYLNI  LLDLTC+ VAD ++GKTP ++R+ FNIKND+TP        EN+WAFE
Sbjct:    4 TKKMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.426e-52
Identity = 104/156 (66.67%), Postives = 121/156 (77.56%), Query Frame = -3
Query:  165 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRAPSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 632
            +SK I L SSDG++FEV+EAVA++SQTI HM+EDDC  +GIPL NV SKIL KVIEYCKKH       D A    ++DL  WD  F+ ++Q+T+F+LILAANYLNIKSLLDLTCQTVADMIKGKTPEEIR TFNI+NDFTP        ENQWAFE
Sbjct:    2 SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKH-----HVDEANPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: ASK12_ARATH (SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.286e-51
Identity = 104/157 (66.24%), Postives = 121/157 (77.07%), Query Frame = -3
Query:  165 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK-HVEASKSDDRAPSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 632
            +SK I L SSDG++FEV+EAVA++SQTI HM+EDDC  +GIPL NV SKIL KVIEYCKK HV      D A    ++DL  WD  F+ ++Q+T+F+LILAANYLNIKSL DLTCQTVADMIKGKTPEEIR TFNI+NDFTP        ENQWAFE
Sbjct:    2 SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKYHV------DEANPISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: ASK13_ARATH (SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.602e-46
Identity = 95/157 (60.51%), Postives = 114/157 (72.61%), Query Frame = -3
Query:  165 SKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRAPSGVDDDLKAWDTDFVKV--DQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 629
            SK + L SSDGE+F+V+EAVA++SQTI HMIEDDC  NG+P+ NVT  ILSKVIEYCKKHV +    + +     D+LK WD +F+K     +TLFD++LAANYLNIK LLDL CQTVADMI GK P+EIR    I+NDFTP        ENQWAFE
Sbjct:    2 SKMVMLLSSDGESFQVEEAVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKKHVVSDSPTEES----KDELKKWDAEFMKALEQSSTLFDVMLAANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: ASK10_ARATH (SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.039e-45
Identity = 95/156 (60.90%), Postives = 109/156 (69.87%), Query Frame = -3
Query:  165 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRAPSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 632
            ++KKI LKSSDG +FEV+E  A + QTI HM EDDC DNGIPLP VT KIL  VIEYC KH       D A    D+DLK WD +F++  Q+T+FDLI+AANYLNIKSLLDL CQTVADMIK  T E  RK FNI+ND+T         ENQW FE
Sbjct:    2 STKKIILKSSDGHSFEVEEEAACQCQTIAHMSEDDCTDNGIPLPEVTGKILEMVIEYCNKH-----HVDAANPCSDEDLKKWDKEFMEKYQSTIFDLIMAANYLNIKSLLDLACQTVADMIKDNTVEHTRKFFNIENDYTHEEEEAVRRENQWGFE 152          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: ASK9_ARATH (SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.356e-45
Identity = 95/157 (60.51%), Postives = 113/157 (71.97%), Query Frame = -3
Query:  165 TSKKITLKSSDGEAFEVDEAVALESQTI-KHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRAPSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 632
            ++KKI LKSSDG +FEV+E  A + Q I  HM E+DC DNGIPLPNVT KIL+ VIEYC KH       D A    DDDLK WD +F++ D +T+FDLI AANYLNIKSL DL CQTVA++IKG TPE+IR+ FNI+ND TP        EN+WAFE
Sbjct:    2 STKKIILKSSDGHSFEVEEEAARQCQIIIAHMSENDCTDNGIPLPNVTGKILAMVIEYCNKH-----HVDAANPCSDDDLKKWDKEFMEKDTSTIFDLIKAANYLNIKSLFDLACQTVAEIIKGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: ASK14_ARATH (SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.721e-44
Identity = 93/157 (59.24%), Postives = 111/157 (70.70%), Query Frame = -3
Query:  165 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRAPSGVDDDLKAWDTDFVK-VDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 632
            +S KI L SSDGE+FEV+EAVA + + ++HMIEDDC    +PL NVT KILS V+EYCKKHV   +SD+          K WD +F+K  DQ T+F L+LAANYLNIK LLDL+ QTVAD IK KTPEEIR+ FNI+NDFTP        EN WAFE
Sbjct:    2 SSNKIVLSSSDGESFEVEEAVARKLKIVEHMIEDDCVVTEVPLQNVTGKILSIVVEYCKKHVVDEESDE---------FKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149          
The following BLAST results are available for this feature:
BLAST of CN188485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SKP1B_ARATH1.180e-6574.27SKP1-like protein 1B OS=Arabidopsis thaliana GN=SK... [more]
SKP1A_ARATH4.484e-6577.36SKP1-like protein 1A OS=Arabidopsis thaliana GN=SK... [more]
ASK4_ARATH8.476e-5668.13SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK... [more]
ASK3_ARATH1.036e-5366.25SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK... [more]
ASK11_ARATH7.426e-5266.67SKP1-like protein 11 OS=Arabidopsis thaliana GN=AS... [more]
ASK12_ARATH6.286e-5166.24SKP1-like protein 12 OS=Arabidopsis thaliana GN=AS... [more]
ASK13_ARATH1.602e-4660.51SKP1-like protein 13 OS=Arabidopsis thaliana GN=AS... [more]
ASK10_ARATH1.039e-4560.90SKP1-like protein 10 OS=Arabidopsis thaliana GN=AS... [more]
ASK9_ARATH1.356e-4560.51SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK... [more]
ASK14_ARATH9.721e-4459.24SKP1-like protein 14 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188485 ID=CN188485; Name=CN188485; organism=Citrus sinensis; type=EST; length=697bp
TTTTTTTTTTTTACAGAGAAGGTTGGGATGATATGACATTAACCCTTTAA
GTGGTTTGATGCTTTTACCAGCTAAAGACATTTGACCTCAGCAGCAACAA
CAAAAAGAAGGCAAAACAAAAAAGAAAAGACACAATTACAAATTGGTCAT
TTGAGATCCTTTCACTCAAAAGCCCACTGATTCTCCCGACGAACCTCTTC
CTCCTCTTCTGGGGTAAAGTCGTTCTTGATATTGAATGTCTTGCGGATCT
CCTCTGGAGTCTTTCCCTTAATCATGTCTGCAACAGTCTGGCAAGTTAAG
TCCAGCAAGCTCTTGATGTTCAGGTAGTTTGCCGCAAGAATAAGATCAAA
GAGAGTGGCCTGATCGACTTTGACGAAATCGGTATCCCAAGCCTTGAGAT
CATCATCGACGCCGCTGGGGGCCCGATCGTCGGACTTAGATGCCTCGACG
TGCTTCTTGCAGTACTCGATGACCTTAGAGAGGATCTTACTGGTAACGTT
AGGCAAAGGGATTCCGTTGTCGGCGCAATCGTCCTCAATCATATGCTTGA
TCGTCTGCGATTCCAACGCCACTGCTTCATCGACCTCGAACGCCTCTCCA
TCCGAGCTCTTCAGCGTGATTTTCTTACTCGTTGACATTCTGATCGATCG
ATCCAACACACTCTTGAAACCCTAACTTTCTTGATATTTATTATATT
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