CN188475

Overview
NameCN188475
Unique NameCN188475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2589 contig Csv1_Contig2589:398..913. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188475 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.962e-18
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = -2
Query:  172 TATCVDILLAVILPPLGVCLKFGRKAEFWICLLLTILGYIPGIIYAVYAITK 327
            TA C+DIL+A+ILPPLGV LKFG   EFWICLLLT LGYIPGIIYA+YAITK
Sbjct:    4 TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of CN188475 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 2.962e-18
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = -2
Query:  172 TATCVDILLAVILPPLGVCLKFGRKAEFWICLLLTILGYIPGIIYAVYAITK 327
            TA C+DIL+A+ILPPLGV LKFG   EFWICLLLT LGYIPGIIYA+YAITK
Sbjct:    4 TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of CN188475 vs. ExPASy Swiss-Prot
Match: LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.126e-17
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = -2
Query:  172 MADGSTATCVDILLAVILPPLGVCLKFGRKAEFWICLLLTILGYIPGIIYAVYAITK 342
            MAD STATC+DI+LA+ILPPLGV  KFG   EFWICLLLT  GY+PGIIYAV+ ITK
Sbjct:    1 MAD-STATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56          
BLAST of CN188475 vs. ExPASy Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.586e-17
Identity = 39/53 (73.58%), Postives = 47/53 (88.68%), Query Frame = -2
Query:  172 STATCVDILLAVILPPLGVCLKFGRKAEFWICLLLTILGYIPGIIYAVYAITK 330
            STAT V+I+LA+ILPPLGV LKFG K EFWICL+LT+ GY+PGI+YA+Y ITK
Sbjct:    2 STATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54          
BLAST of CN188475 vs. ExPASy Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.528e-17
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = -2
Query:  172 STATCVDILLAVILPPLGVCLKFGRKAEFWICLLLTILGYIPGIIYAVYAITK 330
            STAT VDI++A++LPPLGV L+FG   EFWICL+LT+LGYIPGIIYA+Y +TK
Sbjct:    2 STATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54          
BLAST of CN188475 vs. ExPASy Swiss-Prot
Match: LT02_HORVU (Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.521e-14
Identity = 33/51 (64.71%), Postives = 45/51 (88.24%), Query Frame = -2
Query:  178 STATCVDILLAVILPPLGVCLKFGRKAEFWICLLLTILGYIPGIIYAVYAI 330
            ++AT ++++LA+ILPP+GV L++G   EFWICLLLT+LGYIPGIIYAVY +
Sbjct:    2 ASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVL 52          
BLAST of CN188475 vs. ExPASy Swiss-Prot
Match: LT01_HORVU (Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.682e-13
Identity = 33/50 (66.00%), Postives = 43/50 (86.00%), Query Frame = -2
Query:  178 TATCVDILLAVILPPLGVCLKFGRKAEFWICLLLTILGYIPGIIYAVYAI 327
            +AT ++++LA+ILPP+GV L++    EFWICLLLTILGYIPGIIYAVY +
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52          
BLAST of CN188475 vs. ExPASy Swiss-Prot
Match: ESI3_LOPEL (Salt stress-induced hydrophobic peptide ESI3 OS=Lophopyrum elongatum GN=ESI3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.682e-13
Identity = 33/50 (66.00%), Postives = 43/50 (86.00%), Query Frame = -2
Query:  178 TATCVDILLAVILPPLGVCLKFGRKAEFWICLLLTILGYIPGIIYAVYAI 327
            +AT ++++LA+ILPP+GV L++    EFWICLLLTILGYIPGIIYAVY +
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52          
BLAST of CN188475 vs. ExPASy Swiss-Prot
Match: OSR8_ORYSJ (Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.869e-13
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = -2
Query:  178 MADGSTATCVDILLAVILPPLGVCLKFGR-KAEFWICLLLTILGYIPGIIYAVYAI 342
            MA G   T ++ILLA+ILPPLGV L+FG    EF ICLLLTILGY+PGIIYAVY +
Sbjct:    1 MASGRCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVL 56          
BLAST of CN188475 vs. ExPASy Swiss-Prot
Match: RC22_ARATH (UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana GN=At2g24040 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.574e-11
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = -2
Query:  178 STATCVDILLAVILPPLGVCLKFGR-KAEFWICLLLTILGYIPGIIYAVYAI 330
            S   C +I +A++LPP+GVCL+ G    EF+ICL+LT LGY+PGIIYA+YAI
Sbjct:    4 SCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAI 55          
The following BLAST results are available for this feature:
BLAST of CN188475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
LTI6B_ORYSJ2.962e-1880.77Hydrophobic protein LTI6B OS=Oryza sativa subsp. j... [more]
LTI6B_ORYSI2.962e-1880.77Hydrophobic protein LTI6B OS=Oryza sativa subsp. i... [more]
LTI6A_ORYSJ1.126e-1775.44Hydrophobic protein LTI6A OS=Oryza sativa subsp. j... [more]
RCI2B_ARATH5.586e-1773.58Hydrophobic protein RCI2B OS=Arabidopsis thaliana ... [more]
RCI2A_ARATH9.528e-1771.70Hydrophobic protein RCI2A OS=Arabidopsis thaliana ... [more]
LT02_HORVU1.521e-1464.71Low temperature-induced protein lt101.2 OS=Hordeum... [more]
LT01_HORVU1.682e-1366.00Low temperature-induced protein lt101.1 OS=Hordeum... [more]
ESI3_LOPEL1.682e-1366.00Salt stress-induced hydrophobic peptide ESI3 OS=Lo... [more]
OSR8_ORYSJ2.869e-1367.86Hydrophobic protein OSR8 OS=Oryza sativa subsp. ja... [more]
RC22_ARATH1.574e-1159.62UPF0057 membrane protein At2g24040 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C01_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188475 ID=CN188475; Name=CN188475; organism=Citrus sinensis; type=EST; length=520bp
ACGAAACAAGTGCGTCTCTCCCACACACCCTTACACCCCAGGTTGATTAA
GAATCACAACCCATCTGGCTACATCAAATCAGAGCTGTCCATCAAACGGT
TGTAAATAAAAGATCTCATAAACACATGATGCCCTTGGGATCGGTCAATA
GATGAAGAACAGAGATCACTTCTTGGTGATGGCATAAACAGCATAAATAA
TTCCAGGGATATACCCCAGAATTGTCAAGAGCAAACAGATCCAAAACTCA
GCCTTGCGACCAAATTTGAGACAGACACCAAGAGGAGGCAAGATAACAGC
CAAGAGAATATCTACGCATGTTGCTGTGCTTCCATCTGCCATCTTTGATT
GATTCTTAGGAGGTGTAAAATGGAATAAAATAAAATTTAGAGTCGAAAAA
CAAGAACTTTGATTAAAAAAGTGTTTAAGACGGTCTTCACTGCTCTGGGT
TCTGATGGGGGAGTGAAGCTGTACTGGGGAATTGCAGCCGATGGATCTGT
GGTCATATCTGATGACTTGG
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