CN188465

Overview
NameCN188465
Unique NameCN188465
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10369 contig Csv1_Contig10369:130..579. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN188465 vs. ExPASy Swiss-Prot
Match: Y1872_ARATH (Uncharacterized protein At1g68720 OS=Arabidopsis thaliana GN=At1g68720 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.737e-33
Identity = 75/117 (64.10%), Postives = 85/117 (72.65%), Query Frame = -1 
Query:  100 ILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFFQLRRRKKEKIEDDLPPPSCVPIVNQQSKILTKMRHMFHMMFCL 450
            ILQARV+TLVWGAPNKLLGADGSW+RLFP G  + +GSE S+KP  PVHPFHPKMTIRRGVL +ECA  M QFFQLRR+KK+K  D  PP       +   K+L KM H     FCL
Sbjct: 1196 ILQARVNTLVWGAPNKLLGADGSWIRLFPGG--EGNGSEASEKPPPPVHPFHPKMTIRRGVLESECAQTMQQFFQLRRKKKDKNSD--PPTPTDHHHHHLPKLLNKM-HQVLPFFCL 1307
The following BLAST results are available for this feature:
BLAST of CN188465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1872_ARATH1.737e-3364.10Uncharacterized protein At1g68720 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006B16_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188465 ID=CN188465; Name=CN188465; organism=Citrus sinensis; type=EST; length=450bp
TTTTTTTTACTTGGGAGACTTAACTCAATTTAATTTAAGAAAAGCTATGT
CCATTCGCCCTAGAATTCTCAAATAAACTGAATGCTTTTTCACTCTCTAC
AAACAAAACATCATGTGGAACATATGCCGCATCTTTGTAAGGATTTTCGA
TTGTTGGTTTACGATGGGAACACATGAAGGGGGAGGCAGGTCGTCTTCAA
TCTTCTCCTTCTTCCTTCTTCTAAGCTGGAAGAACTGATGCATTATATCT
GCACACTCTGCTGCCAGAACCCCACGTCGGATTGTCATTTTCGGGTGGAA
GGGATGGACCGGACCAGCTGGCTTATCCGAAGGCTCCGAGCCATCTCTCT
TTTCTCCCCCATCTGGGAAAAGTCTGACCCAGCTTCCATCAGCTCCAAGA
AGCTTATTTGGAGCTCCCCATACAAGAGTGCTGACTCTCGCTTGAAGTAT
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