CN188462

Overview
NameCN188462
Unique NameCN188462
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13481 contig Csv1_Contig13481:753..1520. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN188462 vs. ExPASy Swiss-Prot
Match: B2_DAUCA (B2 protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 8.539e-79
Identity = 137/148 (92.57%), Postives = 144/148 (97.30%), Query Frame = -1 
Query:  325 KRFKTFPPSEALPRHETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKICEPLEEDSFRPILHHYDGPKFRLELNVPEAISLLDIFEE 768
            KRFKT PP+E+LPR+ET+GGYIFVCNNDTM ENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHG+FEAASFGGTNIDPTAWEDKK  GESRFPAQVRV+TRKICEPLEEDSFRPILHHYDGPKFRLELN+PEAISLLDIFEE
Sbjct:   57 KRFKTLPPAESLPRNETVGGYIFVCNNDTMQENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGVFEAASFGGTNIDPTAWEDKKNQGESRFPAQVRVMTRKICEPLEEDSFRPILHHYDGPKFRLELNIPEAISLLDIFEE 204
The following BLAST results are available for this feature:
BLAST of CN188462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
B2_DAUCA8.539e-7992.57B2 protein OS=Daucus carota PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006B12_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188462 ID=CN188462; Name=CN188462; organism=Citrus sinensis; type=EST; length=768bp
TTTTTTTTTTTTTTTTTAGATAAAGTCTTTATAATTTGCTCCCCTTTATG
TATAAGCTAAAACAAAAGAACAAAAAGGACAACACCCAACAACAGCCTCC
TCACAAAATGTTTACATCAAGGACACTGTGCATATTCAGCTCTCATACTT
CCCCTCACATACTCTCTCTAAACTATCAATATAATGAAGGCCACAAACTC
TTAAATTCTTTCCCTATTTGTATCATCAAACCACTTTTATGCTGTGTAAC
TTCACTAACTGGTACTTGTATCTGTAAGCTTTTGTTTCATATGGTTGTAT
TGCAGCAATTGCTCAAGAGTCTTGTTCTTCAAATATGTCCAAGAGAGAAA
TTGCCTCAGGCACATTTAGTTCAAGGCGGAACTTGGGGCCATCATAGTGA
TGGAGAATTGGCCTGAAGGAATCCTCTTCAAGCGGTTCACAGATTTTCCG
TGTAACAACCCGGACCTGAGCTGGGAATCGTGATTCGCCAGGGCATTTCT
TGTCTTCCCAGGCTGTAGGATCAATATTTGTGCCTCCAAAGCTAGCAGCC
TCAAAAATTCCATGCAGCTGGTGGGTGGAATAGTTATAAAGGAAAAGGGG
CAAGCCAGGGGTTATAGCTCTCACCGAATCCCTGTAACGTGGTGGCAATC
CAAAGAGCTGTCTTTTGAGATTCTCAGCCATGGTATCATTGTTACAGACA
AAAATATAGCCACCAATGGTTTCGTGTCTCGGCAAAGCCTCCGAGGGTGG
GAAAGTCTTGAACCTCTT
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