CN188450

Overview
NameCN188450
Unique NameCN188450
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13665 contig Csv1_Contig13665:67..883. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 342.043 bits (876), Expect = 5.836e-96
Identity = 167/169 (98.82%), Postives = 169/169 (100.00%), Query Frame = -3 
Query:  258 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 764
            FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA
Sbjct:   13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181

HSP 2 Score: 30.4166 bits (67), Expect = 5.836e-96
Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = -2 
Query:  754 MGLTFTKLFSRLFCQE 801
            MGLTFTKLFSRLF ++
Sbjct:    1 MGLTFTKLFSRLFAKK 16
[Close]
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 340.117 bits (871), Expect = 2.206e-95
Identity = 166/169 (98.22%), Postives = 169/169 (100.00%), Query Frame = -3 
Query:  258 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 764
            FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+KA
Sbjct:   13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181

HSP 2 Score: 30.4166 bits (67), Expect = 2.206e-95
Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = -2 
Query:  754 MGLTFTKLFSRLFCQE 801
            MGLTFTKLFSRLF ++
Sbjct:    1 MGLTFTKLFSRLFAKK 16
[Close]
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 340.117 bits (871), Expect = 6.389e-95
Identity = 166/169 (98.22%), Postives = 169/169 (100.00%), Query Frame = -3 
Query:  258 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 764
            FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL+WLSNNIA+KA
Sbjct:   13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIASKA 181

HSP 2 Score: 28.8758 bits (63), Expect = 6.389e-95
Identity = 12/16 (75.00%), Postives = 15/16 (93.75%), Query Frame = -2 
Query:  754 MGLTFTKLFSRLFCQE 801
            MGL+FTKLFSRLF ++
Sbjct:    1 MGLSFTKLFSRLFAKK 16
[Close]
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 341.273 bits (874), Expect = 1.087e-94
Identity = 167/169 (98.82%), Postives = 168/169 (99.41%), Query Frame = -3 
Query:  258 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 764
            FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA KA
Sbjct:   13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGKA 181

HSP 2 Score: 26.9498 bits (58), Expect = 1.087e-94
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = -2 
Query:  754 MGLTFTKLFSRLFCQE 801
            MGL+F KLFSRLF ++
Sbjct:    1 MGLSFAKLFSRLFAKK 16
[Close]
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 341.658 bits (875), Expect = 1.418e-94
Identity = 167/169 (98.82%), Postives = 169/169 (100.00%), Query Frame = -3 
Query:  258 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 764
            FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+KA
Sbjct:   13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181

HSP 2 Score: 26.1794 bits (56), Expect = 1.418e-94
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = -2 
Query:  754 MGLTFTKLFSRLFCQE 801
            MGL+F KLFSRLF ++
Sbjct:    1 MGLSFGKLFSRLFAKK 16
[Close]
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 338.191 bits (866), Expect = 2.414e-94
Identity = 165/169 (97.63%), Postives = 168/169 (99.41%), Query Frame = -3 
Query:  258 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 764
            FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K+
Sbjct:   13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKS 181

HSP 2 Score: 28.8758 bits (63), Expect = 2.414e-94
Identity = 12/16 (75.00%), Postives = 15/16 (93.75%), Query Frame = -2 
Query:  754 MGLTFTKLFSRLFCQE 801
            MGL+FTKLFSRLF ++
Sbjct:    1 MGLSFTKLFSRLFAKK 16
[Close]
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 334.339 bits (856), Expect = 1.190e-93
Identity = 163/169 (96.45%), Postives = 168/169 (99.41%), Query Frame = -3 
Query:  258 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 764
            FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL+SLRQRHWYIQSTCAT+GEGLYEGLDWLS+NIA K+
Sbjct:   13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIATKS 181

HSP 2 Score: 30.4166 bits (67), Expect = 1.190e-93
Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = -2 
Query:  754 MGLTFTKLFSRLFCQE 801
            MGLTFTKLFSRLF ++
Sbjct:    1 MGLTFTKLFSRLFAKK 16
[Close]
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 334.724 bits (857), Expect = 2.642e-93
Identity = 164/169 (97.04%), Postives = 167/169 (98.82%), Query Frame = -3 
Query:  258 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 764
            FAKKEMRILMVGLDAAGKTTILY+LKLGEIVTTIPTIGFNVETVEY+ ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA
Sbjct:   13 FAKKEMRILMVGLDAAGKTTILYQLKLGEIVTTIPTIGFNVETVEYQYISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKHGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181

HSP 2 Score: 28.8758 bits (63), Expect = 2.642e-93
Identity = 12/16 (75.00%), Postives = 15/16 (93.75%), Query Frame = -2 
Query:  754 MGLTFTKLFSRLFCQE 801
            MGL+FTKLFSRLF ++
Sbjct:    1 MGLSFTKLFSRLFAKK 16
[Close]
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 338.191 bits (866), Expect = 1.302e-92
Identity = 164/168 (97.62%), Postives = 167/168 (99.40%), Query Frame = -3 
Query:  261 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 764
            F KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN+ANK
Sbjct:   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNLANK 180

HSP 2 Score: 23.0978 bits (48), Expect = 1.302e-92
Identity = 10/13 (76.92%), Postives = 10/13 (76.92%), Query Frame = -2 
Query:  763 MGLTFTKLFSRLF 801
            MGL FTK  SRLF
Sbjct:    1 MGLRFTKALSRLF 13
[Close]
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 336.65 bits (862), Expect = 1.302e-92
Identity = 164/169 (97.04%), Postives = 168/169 (99.41%), Query Frame = -3 
Query:  258 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 764
            F+KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+ EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI++KA
Sbjct:   13 FSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSKA 181

HSP 2 Score: 24.6386 bits (52), Expect = 1.302e-92
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = -2 
Query:  754 MGLTFTKLFSRLFCQE 801
            MGL+FTKL  RLF ++
Sbjct:    1 MGLSFTKLLGRLFSKK 16
The following BLAST results are available for this feature:
BLAST of CN188450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF2_ORYSJ5.836e-9698.82ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_ORYSJ2.206e-9598.22ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF_VIGUN6.389e-9598.22ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF2_ARATH1.087e-9498.82ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF1_ARATH1.418e-9498.82ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF1_DAUCA2.414e-9497.63ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF_MAIZE1.190e-9396.45ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]
ARF1_CATRO2.642e-9397.04ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
ARF1_CHLRE1.302e-9297.62ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF1_SALBA1.302e-9297.04ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188450 ID=CN188450; Name=CN188450; organism=Citrus sinensis; type=EST; length=820bp
TTTTTGCGAAAACAATTTCAATGAGTGGTGCACCAAATTAGTTTAAATTA
CCGATATCTAAACCGAGCCAAAAACCTTGGAGTACATGTATCCAACCAAC
AATTCTTCTAGTACAATATAGTTGTAAAGATCCTAGGGCCAAAACAACAC
AACAACCCAACCGTCTCAAACAAAAAGGGTTAAAAAAGAAAAAAAATAGA
TAATATTCACCCCTGCATCCAGAATCGCCAGTCCGCAAAAAGATCTTAAC
AGCTTCAGGCCTTGTTAGCGATGTTGTTGGAGAGCCAATCCAGACCTTCA
TAAAGACCCTCACCAGAGGTTGCACAGGTGCTCTGGATGTACCAGTGGCG
CTGCCTGAGGGAGTGGAGGCCAAGCTTATCAGTAATCTCAGCAGCATTCA
TTGCATTTGGAAGATCCTGTTTGTTAGCAAATACAAGCAACACTGCATCT
CGCAGCTCATCCTCATTCAACATCCTATGCAATTCATCCCTTGCTTCTAC
AATACGGTCTCTGTCATTGCTGTCCACAACAAAAATGAGACCTTGAGTGT
TCTGGAAATAATGCCTCCACAAGGGACGAATCTTGTCCTGGCCACCAACA
TCCCACACAGTGAAACTGATGTTCTTATATTCAACGGTCTCCACATTAAA
CCCAATGGTAGGAATTGTGGTGACAATCTCTCCAAGCTTGAGCTTGTACA
AGATAGTGGTCTTACCAGCAGCATCAAGACCAACCATTAGAATTCGCATC
TCTTTCTTGGCAAAAGAGCCGGCTGAACAGCTTTGTGAAAGTCAGCCCCA
TTCTTCCGGCTGGGGATCAC
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