CN188437

Overview
NameCN188437
Unique NameCN188437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188437 vs. ExPASy Swiss-Prot
Match: PR1B4_ARATH (PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.593e-65
Identity = 123/196 (62.76%), Postives = 150/196 (76.53%), Query Frame = 1
Query:   28 MISASPPVLPIXXXXXXXXXXXXXXXXXXXPVATPAFRALINHISDSLRYGFAQRRPWAELADRSGFSKPESSSEATLRIRKNYSYFRVNYLTXXXXXXXFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLNCAHGAFRVPEDLFLDEQEP 615
            M S++PPVLPI                   P+ATPAFR  IN I+++++ G ++RRPWAELADRS  SKPES S+A +RIRKNYSYF+VNYLT       FSL+T+PFSL+ L+ LLASW+FLYLFRP+DQP+V+FGRTFS+RETLG LI+ SIFV FLT VGS+L+SA+M+G  L CAHGAFR PEDLFLDEQEP
Sbjct:    1 MASSAPPVLPISNPQTVPSAAPSSVESQP-PIATPAFRNFINQITETVKNGLSKRRPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSLVFLLCLLASWLFLYLFRPTDQPIVLFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGVALICAHGAFRAPEDLFLDEQEP 195          
BLAST of CN188437 vs. ExPASy Swiss-Prot
Match: PR1B3_ARATH (PRA1 family protein B3 OS=Arabidopsis thaliana GN=PRA1B3 PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.223e-57
Identity = 111/193 (57.51%), Postives = 139/193 (72.02%), Query Frame = 1
Query:   37 ASPPVLPIXXXXXXXXXXXXXXXXXXXPVATPAFRALINHISDSLRYGFAQRRPWAELADRSGFSKPESSSEATLRIRKNYSYFRVNYLTXXXXXXXFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLNCAHGAFRVPEDLFLDEQEP 615
            A+PP LPI                   PV+TPAFR  ++ +S S+R   +QRRPW EL DRS  S+PES ++A  RIR+N  YF+VNY+T        SL+++PFSLL+L+ L  +WIFLYLFRPSDQPLVV GRTFS+RETLGVL++L+I V FLTSVGS+L SA+M+G G+ C HGAFRVPEDLFLD+QEP
Sbjct:    3 ANPPTLPISDHSGGGSQSQQ-------PVSTPAFRTFLSRLSSSIRQSLSQRRPWLELVDRSAISRPESLTDAYSRIRRNLPYFKVNYVTIVSLVLALSLLSHPFSLLVLLCLFCAWIFLYLFRPSDQPLVVLGRTFSDRETLGVLVILTIVVVFLTSVGSLLTSALMIGFGIVCLHGAFRVPEDLFLDDQEP 188          
BLAST of CN188437 vs. ExPASy Swiss-Prot
Match: PR1B1_ARATH (PRA1 family protein B1 OS=Arabidopsis thaliana GN=PRA1B1 PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.265e-54
Identity = 105/193 (54.40%), Postives = 134/193 (69.43%), Query Frame = 1
Query:   37 ASPPVLPIXXXXXXXXXXXXXXXXXXXPVATPAFRALINHISDSLRYGFAQRRPWAELADRSGFSKPESSSEATLRIRKNYSYFRVNYLTXXXXXXXFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLNCAHGAFRVPEDLFLDEQEP 615
            A+PP LP+                   P+ TPAFR   + +S S+R G +QRRPW EL DRS  ++PES ++A  RIRKN +YF+VNY+        FSL ++P SLL+L+GLL  W+FLYLFRPSDQPLVVFGRTFS+RETL  L++ +I V F+TSVGS+L SA+M+G  + C HGAF VP+DLFLDEQEP
Sbjct:    2 ATPPTLPVTNQQAVQSQP---------PINTPAFRTFFSRLSTSIRDGLSQRRPWTELIDRSSMARPESLTDALSRIRKNLAYFKVNYVAIVSLVLAFSLFSHPLSLLVLIGLLGGWMFLYLFRPSDQPLVVFGRTFSDRETLLALVLSTIVVVFMTSVGSLLTSALMIGVAIVCVHGAFVVPDDLFLDEQEP 185          
BLAST of CN188437 vs. ExPASy Swiss-Prot
Match: PR1B5_ARATH (PRA1 family protein B5 OS=Arabidopsis thaliana GN=PRA1B5 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.710e-51
Identity = 104/202 (51.49%), Postives = 136/202 (67.33%), Query Frame = 1
Query:   28 MISASPPVLPIXXXXXXXXXXXXXXXXXXXPVAT-------PAFRALINHISDSLRYGFAQRRPWAELADRSGFSKPESSSEATLRIRKNYSYFRVNYLTXXXXXXXFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLNCAHGAFRVPEDLFLDEQE 612
            M+S +PPVLPI                   P+ T       P  RA +N +++++  G ++ RPW+EL DRS F+KP+S SEA  R RKN SYFRVNY+        FSL+ +PFSL++L+ L ASW+FLYLFRPSD+PL++FGR+FSE ETLG LI+ +I V F TSVGS+LISA+M+G    C HGAFR P+DLFLDEQ+
Sbjct:    1 MVSTNPPVLPISTTATDTTNQP--------PIVTAVVESQPPVVRAFVNGVTETVCGGLSRSRPWSELLDRSAFTKPDSLSEAGTRFRKNSSYFRVNYVCIVALILGFSLLAHPFSLILLLCLAASWLFLYLFRPSDRPLILFGRSFSEYETLGGLILSTIAVIFFTSVGSVLISALMIGIATICVHGAFRAPDDLFLDEQD 194          
BLAST of CN188437 vs. ExPASy Swiss-Prot
Match: PR1B2_ARATH (PRA1 family protein B2 OS=Arabidopsis thaliana GN=PRA1B2 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.809e-51
Identity = 100/195 (51.28%), Postives = 136/195 (69.74%), Query Frame = 1
Query:   31 ISASPPVLPIXXXXXXXXXXXXXXXXXXXPVATPAFRALINHISDSLRYGFAQRRPWAELADRSGFSKPESSSEATLRIRKNYSYFRVNYLTXXXXXXXFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLNCAHGAFRVPEDLFLDEQEP 615
            +S+SP +LP+                   P+ + AFR  ++ +S SLR   +QRRPW EL DRS F++P+S +++  RIRKN +YF+VNY         FSL+++PFSLL+L+ LL SW+FLYLFR SDQPLV+FGR+FS+RETL  L++ +I V F+TSVGS+L SA+ +G  + C HGAFRVP+DLFLDEQEP
Sbjct:    1 MSSSPAILPVTNQQAATQSQP--------PINSHAFRTFLSRLSSSLRESLSQRRPWLELVDRSSFARPDSLTDSFSRIRKNLAYFKVNYSAIVSLVLAFSLLSHPFSLLVLLSLLGSWMFLYLFRSSDQPLVLFGRSFSDRETLLGLVLTTIVVVFMTSVGSLLTSALTIGIAIVCLHGAFRVPDDLFLDEQEP 187          
BLAST of CN188437 vs. ExPASy Swiss-Prot
Match: PR1B6_ARATH (PRA1 family protein B6 OS=Arabidopsis thaliana GN=PRA1B6 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 7.434e-47
Identity = 90/165 (54.55%), Postives = 118/165 (71.52%), Query Frame = 1
Query:  118 PVATPAFRALINHISDSLRYGFAQRRPWAELADRSGFSKPESSSEATLRIRKNYSYFRVNYLTXXXXXXXFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLNCAHGAFRVPEDLFLDEQE 612
            P    + R L++ +  ++R+  A  RPWAEL DRS FS+P S SEAT R+RKN+SYFR NY+T        SL+T+PF+L +L  L ASW+FLY FRP+DQPLV+ GRTFS+ ETLG+L + ++ V F+TSVGS+L+S + VG      HGAFR PEDLFL+EQE
Sbjct:   20 PQLLSSLRVLLSRVLATVRHASADARPWAELVDRSAFSRPPSLSEATSRVRKNFSYFRANYITLVAILLAASLLTHPFALFLLASLAASWLFLYFFRPADQPLVIGGRTFSDLETLGILCLSTVVVMFMTSVGSLLMSTLAVGIMGVAIHGAFRAPEDLFLEEQE 184          
BLAST of CN188437 vs. ExPASy Swiss-Prot
Match: PR1F1_ARATH (PRA1 family protein F1 OS=Arabidopsis thaliana GN=PRA1F1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.155e-23
Identity = 60/161 (37.27%), Postives = 84/161 (52.17%), Query Frame = 1
Query:  130 PAFRALINHISDSLRYGFAQRRPWAELADRSGFSKPESSSEATLRIRKNYSYFRVNYLTXXXXXXXFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLNCAHGAFRVPEDLFLDEQE 612
            P    +   I+   R G A RRPW ++ D   F+ P   +    RIR N  YF+ NY          SLI NPFSLL+L+ LL +W+FLY  R  D+PL VF R    R  L ++ V+++ + FLT     +  A++ GA    +H A R  EDLF  ++E
Sbjct:   16 PKLEYITRGINQHKRSGLATRRPWKQMLDLGSFNFPRKLATVITRIRANTVYFQTNYTIVVLFSVFLSLIWNPFSLLVLLALLGAWLFLYFLR--DEPLTVFDREIDHRIVLIIMSVITLSILFLTDAKLNIAVAIVAGALAVLSHAAVRKTEDLFQTDEE 174          
BLAST of CN188437 vs. ExPASy Swiss-Prot
Match: PR1F2_ARATH (PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.039e-20
Identity = 56/154 (36.36%), Postives = 81/154 (52.60%), Query Frame = 1
Query:  148 INHISDSLRYGFAQRRPWAELADRSGFSKPESSSEATLRIRKNYSYFRVNYLTXXXXXXXFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLNCAHGAFRVPEDLFLDEQ 609
            I+     ++ G A RRPW  + D    + P    +A  RI+ N  YFR NY          SL+ +P SL++L  L+  WIFLY  R  D+PLVVFG    +R  L  L VL++ +  LT   S ++ +++  A L   H A R  ++LFLDE+
Sbjct:   22 ISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRIKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLR--DEPLVVFGYQIDDRTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEE 173          
BLAST of CN188437 vs. ExPASy Swiss-Prot
Match: PR1F3_ARATH (PRA1 family protein F3 OS=Arabidopsis thaliana GN=PRA1F3 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.477e-20
Identity = 55/147 (37.41%), Postives = 79/147 (53.74%), Query Frame = 1
Query:  169 LRYGFAQRRPWAELADRSGFSKPESSSEATLRIRKNYSYFRVNYLTXXXXXXXFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLNCAHGAFRVPEDLFLDEQ 609
            ++ G A RR W  + D      P   S+A  RI+ N +YFR+NY         FSLI +P SL++   L+  WIFLY  R  D+P+ +F     +R  L VL VL++ +  LT+    ++ A++ GA L   H   R  EDLFLDE+
Sbjct:   29 IKAGLATRRAWRVMFDFHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLR--DEPIKLFRFQIDDRTVLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEE 173          
BLAST of CN188437 vs. ExPASy Swiss-Prot
Match: PR1F4_ARATH (PRA1 family protein F4 OS=Arabidopsis thaliana GN=PRA1F4 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.747e-20
Identity = 63/167 (37.72%), Postives = 86/167 (51.50%), Query Frame = 1
Query:  124 ATPAFRALINHISDS-----LRYGFAQRRPWAELADRSGFSKPESSSEATLRIRKNYSYFRVNYLTXXXXXXXFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLNCAHGAFRVPEDLFLDEQ 609
            A+PA    +NH S S     ++ G A RR W  + D      P   S+   RI+ N +YFR NY         FSLI +P SL++  GL+  WIFLY  R  D PL VF     +R  L  L V++I +  LT+    +++A+M GA L   H   R  +DLFLDE+
Sbjct:   13 ASPA----VNHESISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLAYFRSNYAIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLR--DVPLKVFRFQIDDRAVLIGLSVITIVLLLLTNATFNIVAALMAGAVLVLIHAVIRKTDDLFLDEE 173          
The following BLAST results are available for this feature:
BLAST of CN188437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PR1B4_ARATH1.593e-6562.76PRA1 family protein B4 OS=Arabidopsis thaliana GN=... [more]
PR1B3_ARATH1.223e-5757.51PRA1 family protein B3 OS=Arabidopsis thaliana GN=... [more]
PR1B1_ARATH1.265e-5454.40PRA1 family protein B1 OS=Arabidopsis thaliana GN=... [more]
PR1B5_ARATH1.710e-5151.49PRA1 family protein B5 OS=Arabidopsis thaliana GN=... [more]
PR1B2_ARATH3.809e-5151.28PRA1 family protein B2 OS=Arabidopsis thaliana GN=... [more]
PR1B6_ARATH7.434e-4754.55PRA1 family protein B6 OS=Arabidopsis thaliana GN=... [more]
PR1F1_ARATH1.155e-2337.27PRA1 family protein F1 OS=Arabidopsis thaliana GN=... [more]
PR1F2_ARATH2.039e-2036.36PRA1 family protein F2 OS=Arabidopsis thaliana GN=... [more]
PR1F3_ARATH3.477e-2037.41PRA1 family protein F3 OS=Arabidopsis thaliana GN=... [more]
PR1F4_ARATH7.747e-2037.72PRA1 family protein F4 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A15_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188437 ID=CN188437; Name=CN188437; organism=Citrus sinensis; type=EST; length=617bp
AAAGGGAACAACCTTAAAAGGCCCAAAATGATTTCCGCATCGCCGCCAGT
CCTCCCAATCTCCAACTCCCAACCGACCACCACGGCCTCAACCGCCACCT
CGGTCCAATCCCAACCACCAGTGGCGACCCCGGCTTTCCGCGCCCTAATC
AACCACATCTCCGACTCACTCCGTTACGGCTTCGCCCAGCGCCGCCCGTG
GGCCGAACTCGCCGACCGATCCGGCTTCTCCAAACCGGAGTCGTCCTCCG
AAGCCACCCTCCGCATCCGCAAGAACTACTCCTATTTCCGAGTCAATTAC
CTCACGGTCGTCGCTGTCGTCGTTGCTTTCTCTCTCATCACCAATCCTTT
CTCTCTCCTCATGCTCGTCGGACTCCTTGCCTCCTGGATCTTCCTCTACC
TCTTCCGCCCCTCCGATCAGCCGCTCGTCGTATTCGGCCGCACGTTCAGC
GAGCGCGAGACGCTTGGTGTCTTGATCGTTTTGAGCATCTTCGTCTTTTT
CCTCACCAGTGTCGGATCGATCTTGATCTCGGCTGTGATGGTGGGGGCTG
GTCTGAATTGTGCTCACGGTGCGTTTAGGGTTCCTGAAGATCTGTTCTTG
GACGAACAAGAGCCTTC
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