CN188421

Overview
NameCN188421
Unique NameCN188421
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12765 contig Csv1_Contig12765:40..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188421 vs. ExPASy Swiss-Prot
Match: HS26M_ARATH (26.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP26.5 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.229e-43
Identity = 92/174 (52.87%), Postives = 111/174 (63.79%), Query Frame = 1
Query:  196 RGSVATAANDEKKQDREVAVTEKXXXXXXXXXXXXXXXXXNND------IPVLAEFFPSGLGNALMQATENINRIFENLNFGPSQLMGRVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKG--XXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLN 693
            R    +A   E K + EV+V+EK                  N        P L EFFP  +GN L+QATEN+NRIF+N N  P QLMG+VKEQDDCYKLRY+VPGL K+DVKIT++DG+LTIKG                WS++SYGYYNTSL+LPDDAK ++IKAELKNGVLN
Sbjct:   40 RFMATSAGEQEDKMNTEVSVSEKKSPRQNFPRRRGRKSLWRNTDDHGYFTPTLNEFFPPTIGNTLIQATENMNRIFDNFNVNPFQLMGQVKEQDDCYKLRYEVPGLTKEDVKITVNDGILTIKGDHKAEEEKGSPEEDEYWSSKSYGYYNTSLSLPDDAKVEDIKAELKNGVLN 213          
BLAST of CN188421 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 41/116 (35.34%), Postives = 70/116 (60.34%), Query Frame = 1
Query:  367 ALMQATENINRIFENLNFGPSQLMGR--------VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVL 690
            ++ Q  + ++R+FE+    P + +G         +K+++   ++R+D+PGL K+DVK+++ D +L IKG              WS+R+Y  Y+T L LPD+ + D++KAELKNGVL
Sbjct:   48 SMRQILDTMDRVFEDTMTFPGRNIGGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDS-WSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVL 162          
BLAST of CN188421 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 40/82 (48.78%), Postives = 52/82 (63.41%), Query Frame = 1
Query:  445 VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVL 690
            +KE++   K+R+D+PGL K+DVKI++ D VL IKG              WS RS   Y T L LPD+ + D+IKAELKNGVL
Sbjct:  131 IKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKG----EQKKEDSDDSWSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVL 208          
BLAST of CN188421 vs. ExPASy Swiss-Prot
Match: HS23M_ORYSJ (23.6 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 47/128 (36.72%), Postives = 70/128 (54.69%), Query Frame = 1
Query:  334 LAEFFP----SGLGNALMQATENINRIFENLNFGPSQLMGRVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKG----XXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLN 693
            L +F P     G+G+AL Q  E + R           L G+V+E ++ Y+LR++VPGLGKDDV++ + DGVL I G                  W+A +   Y+  L LP+DA A+ I AE+++GVL+
Sbjct:   86 LRDFVPLRLVDGIGSALSQVAETLTR----------PLTGKVREDEERYRLRFEVPGLGKDDVRVYVDDGVLAIHGEKRDVVEEDRGRDGDGECWAAAT---YHAGLLLPEDAVAEGITAEVRDGVLH 200          
BLAST of CN188421 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.335e-13
Identity = 39/116 (33.62%), Postives = 68/116 (58.62%), Query Frame = 1
Query:  367 ALMQATENINRIFE--------NLNFGPSQLMGRVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVL 690
            ++ Q  + ++RIFE        N+  G  ++   +K+++   ++R+D+PG+ K+DVK+++ D VL IK               WS +SY  Y+T L LPD+ + +++KAELK+GVL
Sbjct:  101 SMRQMLDTMDRIFEDAITIPGRNIGGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGGEDC---WSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVL 213          
BLAST of CN188421 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.977e-12
Identity = 42/116 (36.21%), Postives = 68/116 (58.62%), Query Frame = 1
Query:  370 LMQATENINRIFEN-LNFGPSQLMGR--------VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVL 690
            + Q  + ++R+FE+ + F  S+  G         +K+ ++  K+R+D+PGL K++VK+++ D VL IKG              W  R+Y  Y+T L+LPD+   D++KAELKNGVL
Sbjct:  110 MRQMMDTMDRLFEDTMTFPGSRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKG--EHKKEESGKDDSW-GRNYSSYDTRLSLPDNVDKDKVKAELKNGVL 222          
BLAST of CN188421 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 41/133 (30.83%), Postives = 67/133 (50.38%), Query Frame = 1
Query:  322 DIPVLAEFFPSGLGNALMQATENINRIFENLNFGPSQLMGR----------VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVL 690
            D+       P      + Q  + ++R+FE+    P +              + + ++  K+R+D+PGL K+DVK+++ + +L IKG              W  R+Y  Y+T L+LPD+   D+IKAELKNGVL
Sbjct:   86 DVSPFGVLDPMSPMRTMRQMIDTMDRLFEDTMTFPGRNRASGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHS-WG-RNYSSYDTRLSLPDNVVKDKIKAELKNGVL 216          
The following BLAST results are available for this feature:
BLAST of CN188421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
HS26M_ARATH8.229e-4352.8726.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS22C_SOYBN7.259e-1535.34Small heat shock protein, chloroplastic (Fragment)... [more]
HS25P_ARATH4.705e-1448.7825.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS23M_ORYSJ1.369e-1336.7223.6 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS21C_PEA2.335e-1333.62Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS22C_PETHY1.977e-1236.21Small heat shock protein, chloroplastic OS=Petunia... [more]
HS21C_SOLLC8.306e-1130.83Small heat shock protein, chloroplastic OS=Solanum... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188421 ID=CN188421; Name=CN188421; organism=Citrus sinensis; type=EST; length=695bp
CCTACNACACCCATTTTCTCAAAACTCCCCTAGTACCGAAAAAAATGGCT
CCTTTAAGTTTGGCTTTGAGGAACGTGCAGCAAAGGGTGTCCTTTTCTTC
CCCTTCTCTGGCAAATTTGCATAATAATCTTGGTGAGAGAAGTGCTAGTA
CCATCGGTGGTGTACAAAGGCAAAAGTGGAGTAATGAGTTGTTGAAGAGG
TTCAGTGGCAACAGCTGCCAATGATGAGAAAAAACAAGACAGAGAAGTCG
CCGTGACTGAAAAAAGATCAAGGCTCTTTCCAAGGAGAAGAGGCAGGAGG
GGGAGTCTTTGGAGGAACAATGACATTCCCGTACTTGCTGAGTTCTTTCC
TTCAGGGCTTGGAAATGCACTCATGCAAGCAACCGAAAACATTAACAGGA
TATTCGAAAACTTGAACTTCGGACCATCACAACTCATGGGGCGGGTGAAA
GAGCAAGACGACTGCTACAAGCTGCGGTATGACGTTCCGGGCCTAGGCAA
AGATGATGTGAAGATCACCATTCATGATGGGGTTCTGACAATAAAGGGTG
AGCACAAGGAAGAGGAAGAGGAAAGCTCTGACGACGAACACTGGTCAGCA
AGGAGCTATGGTTACTACAACACAAGCCTCGCGCTGCCTGATGATGCGAA
GGCTGACGAGATTAAGGCCGAGTTGAAAAACGGGGTTCTTAATAT
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