CN188416

Overview
NameCN188416
Unique NameCN188416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3944 contig Csv1_Contig3944:44..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: SEC13_RAT (Protein SEC13 homolog OS=Rattus norvegicus GN=Sec13 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.955e-48
Identity = 86/154 (55.84%), Postives = 108/154 (70.13%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAHP +G+ILASCSYD +VIIWKE N   W + H  + H SSVNS+ WAPH+ GL LACGSSDG IS+ T T +G W+  +I+ AH +G  +V   P
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEEN-GTWEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP 160          

HSP 2 Score: 21.9422 bits (45), Expect = 2.955e-48
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 2
Query:  650 SWAPAMAPGA 679
            SWAPA+ PG+
Sbjct:  157 SWAPAVVPGS 166          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: SEC13_MOUSE (Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=2 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 2.955e-48
Identity = 86/154 (55.84%), Postives = 108/154 (70.13%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAHP +G+ILASCSYD +VIIWKE N   W + H  + H SSVNS+ WAPH+ GL LACGSSDG IS+ T T +G W+  +I+ AH +G  +V   P
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEEN-GTWEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP 160          

HSP 2 Score: 21.9422 bits (45), Expect = 2.955e-48
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 2
Query:  650 SWAPAMAPGA 679
            SWAPA+ PG+
Sbjct:  157 SWAPAVVPGS 166          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: SEC13_HUMAN (Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=1 SV=3)

HSP 1 Score: 189.504 bits (480), Expect = 1.111e-47
Identity = 85/154 (55.19%), Postives = 108/154 (70.13%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAHP +G+ILASCSYD +VIIW+E N   W ++H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T T +G W+  +I+ AH +G  +V   P
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN-GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP 160          

HSP 2 Score: 21.9422 bits (45), Expect = 1.111e-47
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 2
Query:  650 SWAPAMAPGA 679
            SWAPA+ PG+
Sbjct:  157 SWAPAVVPGS 166          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: SEC13_BOVIN (Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.461e-47
Identity = 86/154 (55.84%), Postives = 106/154 (68.83%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            ++T HED +HD  MD+YG RLAT SSD S+KI  + N     +A L+GH GPVWQVAWAHP +G+ILASCSYD +VIIWKE N   W + H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T T  G W+  +I+ AH +G  +V   P
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILVADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEEN-GTWEKTHEHTGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGLGQWEVKKINNAHTIGCNAVSWAP 160          

HSP 2 Score: 21.9422 bits (45), Expect = 2.461e-47
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 2
Query:  650 SWAPAMAPGA 679
            SWAPA+ PG+
Sbjct:  157 SWAPAVVPGS 166          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: SEC13_DICDI (Protein transport protein SEC13 OS=Dictyostelium discoideum GN=sec13 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.945e-46
Identity = 85/159 (53.46%), Postives = 105/159 (66.04%), Query Frame = 1
Query:  184 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            M  Q +++GHED VHD   D+YGK LAT SSD  IKI  +     QHL  L+GH GPVWQVAWAHPKFG ILAS SYD +VI+WKE   N W+  H +  H+ SVNSI+WAPHE GLSLAC SSDG++++     +  W+  +  Q   +GV SV   P
Sbjct:    1 MATQNVDSGHEDMVHDAQFDYYGKFLATCSSDKMIKIFDVGGENPQHLVDLRGHEGPVWQVAWAHPKFGKILASASYDRKVIVWKEVGNNSWSIIHQYAGHELSVNSISWAPHEFGLSLACASSDGSVTIHNYN-NNVWEAPQKIQVSQIGVNSVSWSP 158          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: SEC13_USTMA (Protein transport protein SEC13 OS=Ustilago maydis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.178e-43
Identity = 92/180 (51.11%), Postives = 110/180 (61.11%), Query Frame = 1
Query:  193 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLA-TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE-------------GNQN----------DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            + IET HED VHD  +DFYGKRLAT SSD ++K+  + N      A TL GH+GPVWQVAWAHP FG ILASCSYDG+V+IWK+             G+Q+           WT+      H +SVNSI+WAPHELG  LAC SSDGN+SV T   DG W    +  AHPVG  +V   P
Sbjct:   19 KNIETQHEDMVHDAQLDFYGKRLATCSSDRTVKVFDIVNGTPSTTAETLHGHQGPVWQVAWAHPTFGDILASCSYDGKVVIWKDNGAGASIGASAPYGSQSAYGAPTSSAGGWTKIKEHTLHTASVNSISWAPHELGSILACASSDGNVSVLTFNNDGTWAVDLV-AAHPVGCNAVSWAP 197          

HSP 2 Score: 21.9422 bits (45), Expect = 1.178e-43
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 2
Query:  650 SWAPAMAPGA 679
            SWAPA+ PG+
Sbjct:  194 SWAPAVVPGS 203          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: SEC13_PICGU (Protein transport protein SEC13 OS=Pichia guilliermondii GN=SEC13 PE=3 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 5.108e-42
Identity = 82/155 (52.90%), Postives = 102/155 (65.81%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLA-TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            I   H++ +HD  +D+YGKRLAT SSD +IKI  +  + +  L  TL GH GPVWQVAWAHPKFGSILASCSYDG+V++WKE     W+       H++SVNS++WAPHELG  L C SSDG +SV     D G  T  I +AH +GV S    P
Sbjct:    4 IANAHDELIHDAVLDYYGKRLATCSSDKTIKIFEVEGTENYQLTETLVGHEGPVWQVAWAHPKFGSILASCSYDGKVLVWKESPDRSWSIISEHKVHQASVNSVSWAPHELGAVLLCTSSDGRVSVVDFN-DDGTSTHIIFEAHKIGVNSASWAP 157          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: SEC13_SCHPO (Protein transport protein sec13 OS=Schizosaccharomyces pombe GN=sec13 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.138e-41
Identity = 79/154 (51.30%), Postives = 103/154 (66.88%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            ++T H+D +HD  +D+YGKRLAT SSD +IK+  + N+    L TL+GH GPVWQ+ WAHPKFG+ILAS SYDG VI+W+E     W++      H++SVN+++WAPHE G  LAC SSDG +SV     DG  D TRI  AH  G  +V   P
Sbjct:    4 VDTQHDDMIHDAILDYYGKRLATCSSDQTIKVFSIENNQQTLLETLRGHSGPVWQLGWAHPKFGTILASASYDGHVIVWRE-TGGVWSELMDHTAHQASVNAVSWAPHEYGALLACASSDGKVSVLEFKDDGSCD-TRIFTAHEPGCNAVCWSP 155          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: SEC13_COCIM (Protein transport protein SEC13 OS=Coccidioides immitis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.805e-41
Identity = 82/157 (52.23%), Postives = 107/157 (68.15%), Query Frame = 1
Query:  205 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ-----NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            +GH+D +HD  MD+YG+RLAT SSD +IKI  L   + + + TLKGH G VW VAWAHPKFG+ILAS SYDG+V+IW+E +      + W++   F+ H +SVN ++WAPHELG  LAC SSDG++SV     D  W T +I  AH +GV SV   P
Sbjct:    8 SGHDDMIHDAGMDYYGRRLATCSSDKTIKIFELEGDSHRLIETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQSSAASTGSSWSRVFDFSLHTASVNMVSWAPHELGCVLACASSDGHVSVL-EFRDNSW-THQIFHAHGMGVNSVSWAP 162          

HSP 2 Score: 22.7126 bits (47), Expect = 1.805e-41
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 2
Query:  650 SWAPAMAPGA 679
            SWAPA APG+
Sbjct:  159 SWAPAAAPGS 168          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: SEC13_ASPTN (Protein transport protein sec13 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sec13 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.063e-41
Identity = 81/160 (50.62%), Postives = 106/160 (66.25%), Query Frame = 1
Query:  205 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND--------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            +GHED +HD  +D+YG+RLAT SSD +IK+  +   A + + TLKGH G VW VAWAHPKFG+ILAS SYDG+V+IW+E +QN         WT+   F+ H +SVN ++WAPHE G  L C SSDG++SV     D  W T +I  AH +GV S+   P
Sbjct:   10 SGHEDMIHDAGLDYYGRRLATCSSDKTIKVFEIEGEAHRLVETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQHQNTTSPAAGSAWTKVFDFSLHTASVNMVSWAPHESGCLLGCASSDGHVSVL-EFQDNSW-THQIFHAHGMGVNSISWAP 167          

HSP 2 Score: 22.7126 bits (47), Expect = 3.063e-41
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 2
Query:  650 SWAPAMAPGA 679
            SWAPA APG+
Sbjct:  164 SWAPAAAPGS 173          
The following BLAST results are available for this feature:
BLAST of CN188416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
SEC13_RAT2.955e-4855.84Protein SEC13 homolog OS=Rattus norvegicus GN=Sec1... [more]
SEC13_MOUSE2.955e-4855.84Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=... [more]
SEC13_HUMAN1.111e-4755.19Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=... [more]
SEC13_BOVIN2.461e-4755.84Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 ... [more]
SEC13_DICDI9.945e-4653.46Protein transport protein SEC13 OS=Dictyostelium d... [more]
SEC13_USTMA1.178e-4351.11Protein transport protein SEC13 OS=Ustilago maydis... [more]
SEC13_PICGU5.108e-4252.90Protein transport protein SEC13 OS=Pichia guillier... [more]
SEC13_SCHPO1.138e-4151.30Protein transport protein sec13 OS=Schizosaccharom... [more]
SEC13_COCIM1.805e-4152.23Protein transport protein SEC13 OS=Coccidioides im... [more]
SEC13_ASPTN3.063e-4150.63Protein transport protein sec13 OS=Aspergillus ter... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188416 ID=CN188416; Name=CN188416; organism=Citrus sinensis; type=EST; length=680bp
ATGTCGACCACCACGCAAAAAGCCTAAAAACGTTTATTACTCTCAGCCGG
TGCTACTGGTCGGTCTTCGAATCCGCTCCTCTCTTAAGAAATTTGGAGCT
GAGAACATAAGATAAAAAGGAGCTACGAACTAGTGATCAAGGAGTTGAAG
TTTGAGGGGTAAAATAAAGAAATATAAAGTAAGATGCCTGCACAAAAAAT
TGAAACTGGTCATGAAGACACTGTCCATGATGTAGCCATGGATTTCTATG
GAAAACGTTTAGCCACAGCTTCGTCTGACTCCAGCATTAAGATAATTGGT
TTAAGCAACTCTGCTTCCCAGCACCTTGCTACATTGAAAGGCCATAGAGG
TCCTGTTTGGCAAGTTGCATGGGCACACCCCAAGTTTGGGTCAATCCTTG
CTTCCTGTTCCTATGATGGCCAAGTTATTATCTGGAAGGAAGGTAATCAA
AATGATTGGACACAGGCTCATACTTTTAATGATCATAAATCATCTGTCAA
CTCCATTGCGTGGGCACCTCATGAACTTGGTCTCTCCTTGGCTTGTGGAT
CTTCTGATGGGAACATCTCAGTCTTTACTGCTACAGCTGATGGTGGCTGG
GATACTACCAGGATAGACCAGGCCCATCCAGTCGGAGTAACATCTGTTTT
CATGGGCCCCGGCAATGGCTCCTGGTGCTT
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