CN188415

Overview
NameCN188415
Unique NameCN188415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1270 contig Csv1_Contig1270:14..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188415 vs. ExPASy Swiss-Prot
Match: SEC13_BOVIN (Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.149e-39
Identity = 82/161 (50.93%), Postives = 107/161 (66.46%), Query Frame = -2
Query:  274 IDQAHPVGVTSVSWAPAMAPGALVGLGLLDP---VQKLASCGCDNTVKVWKMY-NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 738
            I+ AH +G  +VSWAPA+ PG+L+          ++K AS GCDN +K+WK   +G WK +    L+ HSDWVR VAWAP++GLP STIAS SQDG V +WTC    G  W  ++L  F   VW VSWS+T N+LAV+  +N VTLWKE+VDG+W  +S V
Sbjct:  145 INNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFVWTCDDASGNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303          
BLAST of CN188415 vs. ExPASy Swiss-Prot
Match: SEC13_RAT (Protein SEC13 homolog OS=Rattus norvegicus GN=Sec13 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.030e-39
Identity = 82/161 (50.93%), Postives = 107/161 (66.46%), Query Frame = -2
Query:  274 IDQAHPVGVTSVSWAPAMAPGALVGLGLLDP---VQKLASCGCDNTVKVWKMY-NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 738
            I+ AH +G  +VSWAPA+ PG+L+          ++K AS GCDN +K+W+   +G WK +    L+ HSDWVR VAWAP++GLP STIAS SQDG V IWTC    G  W  ++L  F   VW VSWS+T N+LAV+  +N VTLWKE+VDG+W  +S V
Sbjct:  145 INNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWREEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303          
BLAST of CN188415 vs. ExPASy Swiss-Prot
Match: SEC13_MOUSE (Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=2 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 8.030e-39
Identity = 82/161 (50.93%), Postives = 107/161 (66.46%), Query Frame = -2
Query:  274 IDQAHPVGVTSVSWAPAMAPGALVGLGLLDP---VQKLASCGCDNTVKVWKMY-NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 738
            I+ AH +G  +VSWAPA+ PG+L+          ++K AS GCDN +K+W+   +G WK +    L+ HSDWVR VAWAP++GLP STIAS SQDG V IWTC    G  W  ++L  F   VW VSWS+T N+LAV+  +N VTLWKE+VDG+W  +S V
Sbjct:  145 INNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWREEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303          
BLAST of CN188415 vs. ExPASy Swiss-Prot
Match: SEC13_HUMAN (Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=1 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 6.798e-38
Identity = 81/161 (50.31%), Postives = 106/161 (65.84%), Query Frame = -2
Query:  274 IDQAHPVGVTSVSWAPAMAPGALVGLGLLDP---VQKLASCGCDNTVKVWKMY-NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 738
            I+ AH +G  +VSWAPA+ PG+L+          +++ AS GCDN +K+WK   +G WK +    L+ HSDWVR VAWAP++GLP STIAS SQDG V IWTC       W  ++L  F   VW VSWS+T N+LAV+  +N VTLWKE+VDG+W  +S V
Sbjct:  145 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303          
BLAST of CN188415 vs. ExPASy Swiss-Prot
Match: SEC13_DICDI (Protein transport protein SEC13 OS=Dictyostelium discoideum GN=sec13 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.200e-34
Identity = 75/158 (47.47%), Postives = 101/158 (63.92%), Query Frame = -2
Query:  271 QAHPVGVTSVSWAPAMAPGALVGLG---LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 732
            Q   +GV SVSW+PA  P +LV      +  P++++ +  CDN +K++K     W +D    L+ H DWVR VAWAPN+GLP S IAS SQD +V++WT  + G  W G+ L  F   VW VSWS+ GN+LAV+  +N VTLWKE VD EW+ +S VE
Sbjct:  145 QVSQIGVNSVSWSPAAIPTSLVNSANTIIPAPIKRIVTGSCDNLIKIFKNVEDKWILD--KQLEDHKDWVRDVAWAPNIGLPYSKIASCSQDRSVIVWTQDENG-VWSGKPLPKFDDIVWRVSWSVIGNILAVSCGDNQVTLWKEGVDSEWKLISHVE 299          
BLAST of CN188415 vs. ExPASy Swiss-Prot
Match: SEC13_USTMA (Protein transport protein SEC13 OS=Ustilago maydis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.916e-32
Identity = 77/179 (43.02%), Postives = 102/179 (56.98%), Query Frame = -2
Query:  271 AHPVGVTSVSWAPAMAPGALVGL------------GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL-------------KDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVSVVE 729
            AHPVG  +VSWAPA+ PG+L+              G    V++ AS GCDNTVK+W+      +     ALQ HSDWVR VA+APN+GLP+S +A+ASQD TV+IWT       W    L               F   VW VSWS++GN+LAV+  +  +TLWKE + G W+ VS ++
Sbjct:  185 AHPVGCNAVSWAPAVVPGSLISAQSVGANAGAASNGEAKLVKRFASAGCDNTVKIWEFSQEANRFVEVEALQGHSDWVRDVAFAPNVGLPRSYLATASQDRTVLIWTQDSPTAAWSKTALNPISASAAAGAGSNKFPDTVWRVSWSVSGNVLAVSCGDGKITLWKENLKGAWECVSEMD 363          
BLAST of CN188415 vs. ExPASy Swiss-Prot
Match: SEC13_MAGGR (Protein transport protein SEC13 OS=Magnaporthe grisea GN=SEC13 PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.373e-30
Identity = 75/158 (47.47%), Postives = 96/158 (60.76%), Query Frame = -2
Query:  271 AHPVGVTSVSWAPAMAPGALVGLGLLDPVQK-LASCGCDNTVKVWKMYNGIWKMDCFPA--LQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ-WEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 729
            AH  GV SVSWAP+ APG+++        Q+   + G DNT+K+W       +  C     L  H+DWV  V W+P + L KS IASASQD TV IWT        W+ RVLK+F T VW VSWSL+GN+LAV+  +N VTLWKE + GEW  V+ +E
Sbjct:  139 AHGQGVNSVSWAPSTAPGSIISTNATPAAQRRFVTGGSDNTLKIWSWDAASAQYRCEEGGVLSGHTDWVLDVDWSPTV-LQKSYIASASQDRTVRIWTSDSSNPGVWQSRVLKEFDTTVWRVSWSLSGNVLAVSSGDNKVTLWKENLKGEWACVNSLE 295          
BLAST of CN188415 vs. ExPASy Swiss-Prot
Match: SEC13_YARLI (Protein transport protein SEC13 OS=Yarrowia lipolytica GN=SEC13 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.899e-30
Identity = 75/159 (47.17%), Postives = 97/159 (61.01%), Query Frame = -2
Query:  271 AHPVGVTSVSWAPAMAPGALVGL--GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ-WEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 729
            AH VG  S SWAP    G+L+    G      ++ + GCDN VK+WK             L  H DWVR VAW+ ++ L KS IASASQD TV++WT  +EG Q W+ ++L+D   P  VW VSWSL+GN+LAV+  +N VTLWKE + GEW+   VVE
Sbjct:  142 AHDVGANSASWAPPAVSGSLIQPINGKASNNIRIVTGGCDNLVKIWKYDPSSKTYVIEETLSGHKDWVRDVAWSSSV-LSKSYIASASQDKTVIVWT--QEGNQPWKKKLLQDIPFPDVVWKVSWSLSGNVLAVSGGDNKVTLWKENLTGEWESAGVVE 297          
BLAST of CN188415 vs. ExPASy Swiss-Prot
Match: SEC13_EMENI (Protein transport protein sec13 OS=Emericella nidulans GN=sec13 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.589e-29
Identity = 73/162 (45.06%), Postives = 102/162 (62.96%), Query Frame = -2
Query:  271 IDQAHPVGVTSVSWAPAMAPGALV----GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 738
            I  AH +GV S+SWAPA +PG+LV    G+G     ++  + G DN +K+W         +    L+ HSDWVR VAW+P++ L KS IASASQD TV +WT  A    QW  +VL +F   +W VSWS +GN+LAV+  +N V+LWKE + G+W++V  +E
Sbjct:  152 IFHAHGMGVNSISWAPAASPGSLVSSNPGIG---QQRRFVTGGSDNLLKIWDYNPETKTYNATQTLEGHSDWVRDVAWSPSI-LSKSYIASASQDKTVRVWTADASNPGQWTSQVL-EFDNVLWRVSWSPSGNILAVSGGDNKVSLWKENLRGQWEKVKDIE 308          
BLAST of CN188415 vs. ExPASy Swiss-Prot
Match: SEC13_NEUCR (Protein transport protein sec-13 OS=Neurospora crassa GN=sec-13 PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.382e-29
Identity = 82/166 (49.40%), Postives = 105/166 (63.25%), Query Frame = -2
Query:  271 IDQAHPVGVTSVSWAPAMAPGALV----GLGLLDPVQKLASCGCDNTVKVWKM---YNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT--CAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 738
            I  AH +GV SVSWAPA  PG++V    G G     ++  + G DN +K+W      NG +K++  P L  H+DWVR VAW+P + L KS IASASQD TV IWT   A  GE W+ +VL +F   VW VSWSL+GN+LA +  NN VTLWKE + GEW+ V  +E
Sbjct:  144 IFHAHGLGVNSVSWAPATTPGSIVSSNPGPGSTGN-RRFVTGGSDNLLKIWTFDPATNG-YKLEREP-LAGHTDWVRDVAWSPTV-LQKSYIASASQDKTVRIWTSDAANPGE-WKCKVL-NFDAAVWRVSWSLSGNVLAASSDNNKVTLWKENLKGEWENVKTIE 303          
The following BLAST results are available for this feature:
BLAST of CN188415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
SEC13_BOVIN6.149e-3950.93Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 ... [more]
SEC13_RAT8.030e-3950.93Protein SEC13 homolog OS=Rattus norvegicus GN=Sec1... [more]
SEC13_MOUSE8.030e-3950.93Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=... [more]
SEC13_HUMAN6.798e-3850.31Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=... [more]
SEC13_DICDI1.200e-3447.47Protein transport protein SEC13 OS=Dictyostelium d... [more]
SEC13_USTMA1.916e-3243.02Protein transport protein SEC13 OS=Ustilago maydis... [more]
SEC13_MAGGR1.373e-3047.47Protein transport protein SEC13 OS=Magnaporthe gri... [more]
SEC13_YARLI8.899e-3047.17Protein transport protein SEC13 OS=Yarrowia lipoly... [more]
SEC13_EMENI2.589e-2945.06Protein transport protein sec13 OS=Emericella nidu... [more]
SEC13_NEUCR3.382e-2949.40Protein transport protein sec-13 OS=Neurospora cra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188415 ID=CN188415; Name=CN188415; organism=Citrus sinensis; type=EST; length=739bp
CCCTTTTCAGATAAGAGTTCATATGTAATTTAACAGAAATATTGGCAGTC
ACAACCCTTAACGTATGGATGGAGATTAAGACACCATCATTTGTTCCTGA
ATCTGGCAAGAAAGAATAACAACTAACCAAATACAAATTAAGTATTCAAA
CAAAATCAATCCAACCCAAAAAAAAACTAAACCAGGTGTAAGAAAGGCTA
CTTCCAATAAGTCCAAAAGAGAACACAATGATTGTGAAAGGGTAAGTAGG
AAGACACCTTATGTCTGTGGCTCGACTACACTCACTTGTTGCCACTCACC
ATCAACAGCTTCCTTCCACAATGTCACATTATTTGCATCAGCCACAGCCA
ACAAATTTCCAGTCAGTGACCACGAAACACTCCAAACTGGTGTCTTAAAA
TCCTTCAAAACTCGACCCTCCCATTGCTCCCCTTCCTTGGCACAGGTCCA
AATAACAACTGTCCCATCCTGTGATGCACTTGCAATTGTGGATTTTGGAA
GACCCAAGTTGGGTGCCCATGCCACGCTCCGCACCCAATCACTGTGCATC
TGAAGGGCAGGGAAGCAATCCATCTTCCAAATCCCATTATACATCTTCCA
CACCTTTACAGTATTATCACAACCACAAGAAGCCAATTTCTGAACAGGAT
CCAGTAAGCCCAATCCAACTAAAGCACCAGGAGCCATTGCCGGGGCCCAT
GAAACAGATGTTACTCCGACTGGATGGGCCTGGTCTATC
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