CN188414

Overview
NameCN188414
Unique NameCN188414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188414 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 8.288e-58
Identity = 106/177 (59.89%), Postives = 132/177 (74.58%), Query Frame = 2
Query:   56 EAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTT-SYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEP-SDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENG 580
            E P S+DWRK+G V  VKDQG CGSCW+FST GA+EGIN +VTGDLI+LSEQELVDCDT+ + GC+GG MDYAFE++I NGGIDT+ DYPY GVDGTC+  ++  KVV+ID Y+DV   S+ +L  A   QPIS+ +      FQLY SGI++G C      +DH V+ VGYG+ENG
Sbjct:  136 ELPESIDWRKKGAVAEVKDQGGCGSCWAFSTIGAVEGINQIVTGDLITLSEQELVDCDTSYNEGCNGGLMDYAFEFIIKNGGIDTDKDYPYKGVDGTCDQIRKNAKVVTIDSYEDVPTYSEESLKKAVAHQPISIAIEAGGRAFQLYDSGIFDGSCGTQ---LDHGVVAVGYGTENG 309          
BLAST of CN188414 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 2.257e-55
Identity = 102/190 (53.68%), Postives = 132/190 (69.47%), Query Frame = 2
Query:   17 NAKSNLHNTVQSCEAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTT-SYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALLCAAVQ-QPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENG 580
            N        V   E P ++DWR++G V P+KDQG+CGSCW+FSTT A+EGIN +VTG+LISLSEQELVDCD + + GC+GG MDYAF++++ NGG++TE DYPY G  G CN   + ++VVSIDGY+DV   D   L  A+  QP+SV +      FQ Y SGI+ G C  +   +DHAV+ VGYGSENG
Sbjct:  131 NVNQKYSAAVNGKEVPETVDWRQKGAVNPIKDQGTCGSCWAFSTTAAVEGINKIVTGELISLSEQELVDCDKSYNQGCNGGLMDYAFQFIMKNGGLNTEKDYPYRGFGGKCNSFLKNSRVVSIDGYEDVPTKDETALKKAISYQPVSVAIEAGGRIFQHYQSGIFTGSCGTN---LDHAVVAVGYGSENG 317          
BLAST of CN188414 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 2.948e-55
Identity = 101/175 (57.71%), Postives = 128/175 (73.14%), Query Frame = 2
Query:   62 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTT-SYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEP-SDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENG 580
            P S+DWR +G V  +KDQG CGSCW+FS   A+EGIN +VTGDLISLSEQELVDCDT+ + GC+GG MDYAF+++INNGGIDTE DYPY G D  C++ ++  KVV+ID Y+DV P S+++L  A   QP+SV +      FQLY+SGI+ G C      +DH V  VGYG+ENG
Sbjct:  130 PESVDWRTKGAVAEIKDQGGCGSCWAFSAIAAVEGINQIVTGDLISLSEQELVDCDTSYNEGCNGGLMDYAFDFIINNGGIDTEDDYPYKGKDERCDVNRKNAKVVTIDSYEDVTPNSETSLQKAVANQPVSVAIEAGGRAFQLYSSGIFTGKCGT---ALDHGVAAVGYGTENG 301          
BLAST of CN188414 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 4.706e-53
Identity = 97/177 (54.80%), Postives = 129/177 (72.88%), Query Frame = 2
Query:   56 EAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTT-SYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALLCAAVQ-QPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENG 580
            E P ++DWR++G V  +KDQG+CGSCW+FST  A+EGIN +VTG+L+SLSEQELVDCD + + GC+GG MDYAF++++ NGG++TE DYPY G +G CN   + ++VV+IDGY+DV   D   L  AV  QP+SV +      FQ Y SGI+ G C  +   +DHAV+ VGYGSENG
Sbjct:   99 EVPVTVDWRQKGAVNAIKDQGTCGSCWAFSTAAAVEGINKIVTGELVSLSEQELVDCDKSYNQGCNGGLMDYAFQFIMKNGGLNTEKDYPYHGTNGKCNSLLKNSRVVTIDGYEDVPSKDETALKRAVSYQPVSVAIDAGGRAFQHYQSGIFTGKCGTN---MDHAVVAVGYGSENG 272          
BLAST of CN188414 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.048e-52
Identity = 97/178 (54.49%), Postives = 127/178 (71.35%), Query Frame = 2
Query:   56 EAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTT--SYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSDSALLCAAV-QQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENG 580
            E P S+DWR++G V PVK+QG CGSCW+FS    +E IN LVTG++I+LSEQELV+C T   + GC+GG MD AF+++I NGGIDTE DYPY  VDG C+I +E  KVVSIDG++DV  +D   L  AV  QP+SV +     +FQLY SG+++G C      +DH V+ VGYG++NG
Sbjct:  140 ELPESVDWREKGAVAPVKNQGQCGSCWAFSAVSTVESINQLVTGEMITLSEQELVECSTNGQNSGCNGGLMDDAFDFIIKNGGIDTEDDYPYKAVDGKCDINRENAKVVSIDGFEDVPQNDEKSLQKAVAHQPVSVAIEAGGREFQLYHSGVFSGRCGTS---LDHGVVAVGYGTDNG 314          
BLAST of CN188414 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.369e-52
Identity = 99/175 (56.57%), Postives = 125/175 (71.43%), Query Frame = 2
Query:   62 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTT-SYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVE-PSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENG 580
            P S+DWR++G++  VKDQGSCGSCW+FS   A+E INA+VTG+LISLSEQELVDCD + + GCDGG MDYAFE+VI NGGIDTE DYPY   +G C+  ++  KVV ID Y+DV   ++ AL  A   QP+S+ +     DFQ Y SGI+ G C      +DH V+I GYG+ENG
Sbjct:   19 PESIDWREKGVLVGVKDQGSCGSCWAFSAVAAMESINAIVTGNLISLSEQELVDCDRSYNEGCDGGLMDYAFEFVIKNGGIDTEEDYPYKERNGVCDQYRKNAKVVKIDSYEDVPVNNEKALQKAVAHQPVSIALEAGGRDFQHYKSGIFTGKCGT---AVDHGVVIAGYGTENG 190          
BLAST of CN188414 vs. ExPASy Swiss-Prot
Match: XCP1_ARATH (Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.336e-52
Identity = 96/177 (54.24%), Postives = 123/177 (69.49%), Query Frame = 2
Query:   56 EAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTT-SYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDV-EPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENG 580
            + P S+DWRK+G V PVKDQG CGSCW+FST  A+EGIN + TG+L SLSEQEL+DCDTT + GC+GG MDYAF+++I+ GG+  E DYPY   +G C   KE+ + V+I GY+DV E  D +L+ A   QP+SV +  S  DFQ Y  G++NG C  D   +DH V  VGYGS  G
Sbjct:  136 DLPKSVDWRKKGAVAPVKDQGQCGSCWAFSTVAAVEGINQITTGNLSSLSEQELIDCDTTFNSGCNGGLMDYAFQYIISTGGLHKEDDYPYLMEEGICQEQKEDVERVTISGYEDVPENDDESLVKALAHQPVSVAIEASGRDFQFYKGGVFNGKCGTD---LDHGVAAVGYGSSKG 309          
BLAST of CN188414 vs. ExPASy Swiss-Prot
Match: XCP2_ARATH (Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 6.796e-52
Identity = 94/175 (53.71%), Postives = 129/175 (73.71%), Query Frame = 2
Query:   62 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTT-SYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDVEPSD-SALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSENG 580
            P S+DWRK+G V  VK+QGSCGSCW+FST  A+EGIN +VTG+L +LSEQEL+DCDTT + GC+GG MDYAFE+++ NGG+  E DYPY+  +GTC + K+E++ V+I+G++DV  +D  +LL A   QP+SV +  S  +FQ Y+ G+++G C  D   +DH V  VGYGS  G
Sbjct:  139 PKSVDWRKKGAVAEVKNQGSCGSCWAFSTVAAVEGINKIVTGNLTTLSEQELIDCDTTYNNGCNGGLMDYAFEYIVKNGGLRKEEDYPYSMEEGTCEMQKDESETVTINGHQDVPTNDEKSLLKALAHQPLSVAIDASGREFQFYSGGVFDGRCGVD---LDHGVAAVGYGSSKG 310          
BLAST of CN188414 vs. ExPASy Swiss-Prot
Match: CYSEP_RICCO (Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 6.796e-52
Identity = 96/172 (55.81%), Postives = 125/172 (72.67%), Query Frame = 2
Query:   62 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDT-TSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDV-EPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGS 571
            P+S+DWRK+G VT VKDQG CGSCW+FST  A+EGIN + T  L+SLSEQELVDCDT  + GC+GG MDYAFE++   GGI TE++YPY   DGTC+++KE    VSIDG+++V E  ++ALL A   QP+SV +    SDFQ Y+ G++ G C  +   +DH V IVGYG+
Sbjct:  127 PASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTE---LDHGVAIVGYGT 295          
BLAST of CN188414 vs. ExPASy Swiss-Prot
Match: CPGP2_ZINOF (Zingipain-2 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 9.813e-51
Identity = 95/175 (54.29%), Postives = 126/175 (72.00%), Query Frame = 2
Query:   56 EAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSYGCDGGYMDYAFEWVINNGGIDTESDYPYTGVDGTCNITKEETKVVSIDGYKDV-EPSDSALLCAAVQQPISVGMVGSASDFQLYTSGIYNGDCSNDPYYIDHAVLIVGYGSEN 577
            + P S+DWR+ G V PVK+QG CGSCW+FST  A+EGIN +VTGDLISLSEQ+LVDC T ++GC GG+M+ AF++++NNGGI++E  YPY G DG CN T     VVSID Y++V   ++ +L  A   QP+SV M  +  DFQLY SGI+ G C+      +HA+ +VGYG+EN
Sbjct:    2 DLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICNST-VNAPVVSIDSYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCN---ISANHALTVVGYGTEN 172          
The following BLAST results are available for this feature:
BLAST of CN188414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
RD21A_ARATH8.288e-5859.89Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
GCP1_ARATH2.257e-5553.68Germination-specific cysteine protease 1 OS=Arabid... [more]
ORYA_ORYSJ2.948e-5557.71Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
CYSP4_BRANA4.706e-5354.80Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
ORYB_ORYSJ1.048e-5254.49Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSPL_SOLLC1.369e-5256.57Low-temperature-induced cysteine proteinase (Fragm... [more]
XCP1_ARATH2.336e-5254.24Xylem cysteine proteinase 1 OS=Arabidopsis thalian... [more]
XCP2_ARATH6.796e-5253.71Xylem cysteine proteinase 2 OS=Arabidopsis thalian... [more]
CYSEP_RICCO6.796e-5255.81Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1[more]
CPGP2_ZINOF9.813e-5154.29Zingipain-2 OS=Zingiber officinale PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188414 ID=CN188414; Name=CN188414; organism=Citrus sinensis; type=EST; length=581bp
ATTTAAAGCGATTGGTAATGCAAAGAGTAACTTGCACAACACGGTACAAT
CATGCGAAGCACCATCGAGCTTGGATTGGAGGAAAAGGGGAATCGTTACT
CCTGTTAAGGACCAAGGAAGCTGTGGAAGTTGTTGGTCGTTCTCTACGAC
TGGAGCCATTGAAGGAATAAATGCCTTGGTCACTGGAGACCTCATTAGCC
TTTCGGAACAAGAACTCGTGGATTGTGATACCACAAGCTATGGATGTGAT
GGAGGCTACATGGACTATGCATTTGAATGGGTTATTAACAACGGTGGAAT
CGACACAGAATCTGATTATCCTTACACCGGTGTCGATGGTACCTGCAATA
TCACCAAGGAGGAAACCAAAGTTGTATCTATTGATGGTTATAAAGATGTA
GAGCCATCCGATAGTGCACTGCTATGTGCTGCAGTTCAACAACCGATTAG
CGTTGGCATGGTTGGCTCTGCAAGTGATTTTCAGCTATATACAAGTGGAA
TTTACAATGGTGACTGTTCCAACGACCCATATTACATTGATCATGCGGTT
TTGATAGTTGGTTATGGCTCTGAAAATGGTG
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