CN188409

Overview
NameCN188409
Unique NameCN188409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188409_ssr168 microsatellite CN188409_ssr168:168..179. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2662 contig Csv1_Contig2662:1..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1B_BRACM (GTP-binding protein SAR1B OS=Brassica campestris GN=SAR1B PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.796e-33
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 2 
Query:  599 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 799
            MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK
Sbjct:    1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67
[Close]
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1B_ARATH (GTP-binding protein SAR1B OS=Arabidopsis thaliana GN=SAR1B PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.796e-33
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 2 
Query:  599 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 799
            MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK
Sbjct:    1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67
[Close]
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1A_ARATH (GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.083e-31
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 2 
Query:  599 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 799
            MF+ DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK
Sbjct:    1 MFMIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67
[Close]
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1A_BRACM (GTP-binding protein SAR1A OS=Brassica campestris GN=SAR1A PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.415e-31
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 2 
Query:  599 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 799
            MF+ DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK
Sbjct:    1 MFVIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67
[Close]
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.020e-31
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 2 
Query:  599 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 799
            MFL DWFYGILA+LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFK
Sbjct:    1 MFLVDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFK 67
[Close]
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR2_SOLLC (GTP-binding protein SAR2 OS=Solanum lycopersicum GN=SAR2 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.484e-30
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = 2 
Query:  599 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 799
            MFL DWFYG+LASLGLWQK+AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIG IKFK
Sbjct:    1 MFLVDWFYGVLASLGLWQKDAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGNIKFK 67
[Close]
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1_DEBHA (Small COPII coat GTPase SAR1 OS=Debaryomyces hansenii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.190e-23
Identity = 49/66 (74.24%), Postives = 57/66 (86.36%), Query Frame = 2 
Query:  599 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            M+LFDWF  +LASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG ++F
Sbjct:    1 MWLFDWFQDVLASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRF 66
[Close]
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1_LODEL (Small COPII coat GTPase SAR1 OS=Lodderomyces elongisporus GN=SAR1 PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.200e-22
Identity = 49/66 (74.24%), Postives = 57/66 (86.36%), Query Frame = 2 
Query:  599 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            M++FDWF  ILASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG ++F
Sbjct:    1 MWIFDWFQDILASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRF 66
[Close]
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1_PICGU (Small COPII coat GTPase SAR1 OS=Pichia guilliermondii GN=SAR1 PE=3 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.568e-22
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 2 
Query:  599 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            M++FDWF  +LASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG ++F
Sbjct:    1 MWIFDWFQDVLASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRF 66
[Close]
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1_PICST (Small COPII coat GTPase SAR1 OS=Pichia stipitis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.047e-22
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 2 
Query:  599 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            M+LFDWF  +L+SLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG ++F
Sbjct:    1 MWLFDWFQDVLSSLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRF 66
The following BLAST results are available for this feature:
BLAST of CN188409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
SAR1B_BRACM9.796e-33100.00GTP-binding protein SAR1B OS=Brassica campestris G... [more]
SAR1B_ARATH9.796e-33100.00GTP-binding protein SAR1B OS=Arabidopsis thaliana ... [more]
SAR1A_ARATH1.083e-3195.52GTP-binding protein SAR1A OS=Arabidopsis thaliana ... [more]
SAR1A_BRACM1.415e-3195.52GTP-binding protein SAR1A OS=Brassica campestris G... [more]
SAR1_TOBAC7.020e-3195.52GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]
SAR2_SOLLC3.484e-3092.54GTP-binding protein SAR2 OS=Solanum lycopersicum G... [more]
SAR1_DEBHA9.190e-2374.24Small COPII coat GTPase SAR1 OS=Debaryomyces hanse... [more]
SAR1_LODEL1.200e-2274.24Small COPII coat GTPase SAR1 OS=Lodderomyces elong... [more]
SAR1_PICGU1.568e-2272.73Small COPII coat GTPase SAR1 OS=Pichia guilliermon... [more]
SAR1_PICST2.047e-2272.73Small COPII coat GTPase SAR1 OS=Pichia stipitis GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005P22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005P22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188409 ID=CN188409; Name=CN188409; organism=Citrus sinensis; type=EST; length=800bp
CGCCATCGCATTAGATTCGCATCAACTGGAAAAGCCCCCAGTACCAATAA
CAAAAATAAACATTCTACAGCATTTGAGATTGTAGATGGCAAAACAGATT
GGCATCCAAGTCTCCATATGCAATATCACTAAGAAAAAAAAAACCCTACA
ATAACTATAGAACCGAAAATAATAATAATACAGCAACATGCCTTCTCTCA
AGGGAAAAAAAAATATCTATTTTAAAACCTAAGCAAGTTAATTAAAATGC
CAGCCGGAAAATTTTCTTGGTATGCTTTTAGGTCCTACAGCATCCACTAC
TCTACCCAACAAATCAGAGCAGGAAAACAGTGTGATGCGGTGAAGTTAAT
TTACCACCTGTTAGTGATTCACGGTATCCATATTAAGTGCTTCCAGCAGC
ATCACTCCCAGCAGATTTGCGATTCATGTAACGGATGACAGCGTCTTCAA
CCCTAAGATTTGACAACCACCCCCCACCAACAAACGCTATCACGCACTCG
TTGATTCCTCCTAATTATCTCAAAGATTCATCATATTTGAGCCAAAATTC
GATCTTTTTGATAGATTCATTATAAATAAGGAGTAATAAAAGAAACCCAT
GTTTTTGTTTGATTGGTTTTATGGGATTCTTGCATCTCTTGGGCTCTGGC
AAAAAGAGGCCAAGATCTTGTTTCTCGGCCTCGATAATGCCGGTAAAACG
ACGCTGCTTCATATGTTGAAAGATGAGAGATTAGTTCAACATCAACCAAC
ACAACATCCCACTTCGGAGGAACTGAGTATTGGGAAAATCAAGTTTAAGG
back to top