CN188407

Overview
NameCN188407
Unique NameCN188407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length550
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10651 contig Csv1_Contig10651:6..555. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN188407 vs. ExPASy Swiss-Prot
Match: SIN3_ARATH (Paired amphipathic helix protein Sin3 OS=Arabidopsis thaliana GN=SIN3 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 6.748e-35
Identity = 80/139 (57.55%), Postives = 100/139 (71.94%), Query Frame = 1 
Query:    4 YENARVLLHDENLYRIECS-SIPTRLSIQVMDNGHDKPEVTAVSMDPNFAAYLYHDFLSV-PDKKEKPGIFLKRNKRKFVGNDEFSATCRAMEGLQVVNGLECKITCNSSKVSYVLDTEDFLFRKKKRTFHQNGPCHNQ 414
            Y+N RVLL DEN+YRIEC  S P +LSIQ+M NG DKP+VT+VS+DP FAAYL++DFLS+ P+ +E   I+L RNKRK    DE      + + +++ NGLECKI C SSKVSYVL+TED L R KKR   +   CHNQ
Sbjct: 1204 YDNTRVLLPDENIYRIECRLSTPAKLSIQLMCNGLDKPDVTSVSIDPTFAAYLHNDFLSIQPNAREDRRIYLNRNKRKVCREDE---QLYSTDEVKIKNGLECKIACGSSKVSYVLETEDLLVRVKKR---RKTLCHNQ 1336
The following BLAST results are available for this feature:
BLAST of CN188407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SIN3_ARATH6.748e-3557.55Paired amphipathic helix protein Sin3 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005P20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005P20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188407 ID=CN188407; Name=CN188407; organism=Citrus sinensis; type=EST; length=550bp
AGTTATGAAAATGCTCGCGTTCTACTTCATGATGAGAATCTTTATCGTAT
TGAATGTTCATCCATACCCACCCGCCTATCTATTCAGGTTATGGACAATG
GACATGATAAGCCTGAAGTGACAGCTGTTTCCATGGATCCTAATTTTGCA
GCGTACCTGTACCATGACTTCCTTTCAGTTCCTGACAAGAAAGAGAAGCC
TGGAATATTCTTGAAGAGGAATAAACGCAAATTTGTAGGCAATGATGAGT
TTTCGGCAACATGCCGGGCCATGGAAGGGCTTCAAGTTGTCAATGGTTTG
GAGTGTAAGATAACTTGCAATTCATCCAAGGTCTCATATGTTTTGGATAC
TGAAGATTTTTTGTTTCGTAAAAAGAAAAGAACTTTCCATCAGAATGGCC
CGTGCCACAACCAGGCAAGGGCTTCAAATGGTTATCCAATTAGAAGATTA
CAACGGTTTCAAAGATGGCTTTCTGGCTCGTAATGTGCCCTGCAGTAGAT
ATGCCTTTAGCACACATTAGGTACACTGGTGCTGGAACTGGAAAGTTTGA
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