CN188398

Overview
NameCN188398
Unique NameCN188398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188398 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.836e-23
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = -2
Query:  108 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 305
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CN188398 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.233e-18
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = -2
Query:  105 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCGS 296
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CN188398 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.610e-18
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = -2
Query:  111 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 305
            MSD CGNCDCAD SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CN188398 vs. ExPASy Swiss-Prot
Match: SYNC1_ARATH (Asparaginyl-tRNA synthetase, cytoplasmic 1 OS=Arabidopsis thaliana GN=SYNC1 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 3.875e-17
Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = 1
Query:  478 DSRQLVQTGTCVYVEGVLAIPPVGAGIKQKIELRVKKVIDVGLV-AAEYPLSRKSTIL 648
            D   LV TGTCV V+GVL +PP G G +Q+IEL V KVIDVG V A++YPL +    L
Sbjct:   94 DVSNLVATGTCVTVDGVLKVPPKGKGTQQQIELNVVKVIDVGTVDASKYPLPKTKLTL 151          

HSP 2 Score: 41.2022 bits (95), Expect = 3.875e-17
Identity = 19/32 (59.38%), Postives = 22/32 (68.75%), Query Frame = 2
Query:  371 WVKIGRKQDKDWLAFFEVNDGSCFDNLQVLVE 466
            WVK GR Q K   +F  VNDGSC  NLQV+V+
Sbjct:   58 WVKSGRDQGKRTFSFLAVNDGSCPANLQVMVD 89          

HSP 3 Score: 25.409 bits (54), Expect = 3.875e-17
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 3
Query:  630 KKKHNLEYLRDNIYLRPRTNT 692
            K K  LE LRD ++LR RTN+
Sbjct:  146 KTKLTLETLRDVLHLRSRTNS 166          
BLAST of CN188398 vs. ExPASy Swiss-Prot
Match: SYNC3_ARATH (Asparaginyl-tRNA synthetase, cytoplasmic 3 OS=Arabidopsis thaliana GN=SYNC3 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 8.410e-17
Identity = 31/53 (58.49%), Postives = 36/53 (67.92%), Query Frame = 1
Query:  478 DSRQLVQTGTCVYVEGVLAIPPVGAGIKQKIELRVKKVIDVGLV-AAEYPLSR 633
            D  +LV TGTCV V+GVL IPP G G+KQ IEL V+ VI VG V    YPL +
Sbjct:   91 DLSRLVATGTCVTVDGVLKIPPEGKGLKQSIELSVETVIAVGTVDPTTYPLPK 143          

HSP 2 Score: 46.2098 bits (108), Expect = 8.410e-17
Identity = 21/32 (65.62%), Postives = 24/32 (75.00%), Query Frame = 2
Query:  371 WVKIGRKQDKDWLAFFEVNDGSCFDNLQVLVE 466
            WVK GR+Q K   AF EVNDGSC  NLQV+V+
Sbjct:   55 WVKTGRQQGKGTFAFLEVNDGSCPANLQVMVD 86          

HSP 3 Score: 24.2534 bits (51), Expect = 8.410e-17
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 3
Query:  630 KKKHNLEYLRDNIYLRPRTN 689
            K K   E+LRD ++LR RTN
Sbjct:  143 KTKLTPEFLRDVLHLRSRTN 162          
BLAST of CN188398 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.385e-16
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = -2
Query:  111 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 305
            MS  C NCDC+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CN188398 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.385e-16
Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = -2
Query:  108 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 305
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CN188398 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.666e-15
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = -2
Query:  108 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 305
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CN188398 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.666e-15
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = -2
Query:  108 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 305
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CN188398 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.660e-13
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = -2
Query:  108 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 305
            MSD CGNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CN188398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
MT3_CARPA2.836e-2369.70Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC1.233e-1860.94Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE1.610e-1867.69Metallothionein-like protein type 3 OS=Actinidia d... [more]
SYNC1_ARATH3.875e-1756.90Asparaginyl-tRNA synthetase, cytoplasmic 1 OS=Arab... [more]
SYNC3_ARATH8.410e-1758.49Asparaginyl-tRNA synthetase, cytoplasmic 3 OS=Arab... [more]
MT3_PRUAV4.385e-1658.46Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO4.385e-1659.09Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ1.666e-1554.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI1.666e-1554.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ2.660e-1350.00Metallothionein-like protein 3B OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005P15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005P15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188398 ID=CN188398; Name=CN188398; organism=Citrus sinensis; type=EST; length=750bp
TTTTTTTTTTTTTTTTTATCACCCTTACATTATTCTTAACCCCCACAATC
TTTAGGCACACTTGCAGCTTCTTATTTTTTGCTGCATGTGTTTGCTTATT
AGTGACTACCACAAGTGCAGTTCACACAAGCGCAGGTGGGGCCGCACTTG
CAGTTACCTTCAGCCTCAGCAGCCTGAACGTCCATGACAACAACGGTGCT
GACAAAGCTCAAGTCAGTCTCGACGAAGTCAGCAGCATAGCTGCTTCCCT
TCTTCACACACTGGCTCCTGTCAGCGCAGTCGCAGTTGCCGCAGGTGTCC
GACATGTTGATTGAGCTTAGAACTTAGAACTTAAAACTGGAAATAGAGGG
CTCTTTATTGTACGAAACGATGGGTCAAAATTGGTCGTAAACAAGATAAA
GATTGGCTGGCATTTTTCGAGGTGAACGACGGTTCATGCTTTGATAATTT
ACAAGTACTTGTGGAAAGAAAGTAGCGGATTCGAGACAGCTCGTGCAAAC
TGGCACTTGTGTTTATGTTGAGGGCGTACTCGCAATCCCTCCTGTGGGGG
CGGGAATTAAGCAGAAGATTGAGCTTCGGGTTAAGAAGGTCATCGATGTG
GGTTTGGTTGCGGCGGAGTATCCCCTGTCAAGAAAAAGCACAATCTTGAG
TATTTGAGGGATAACATTTATTTACGACCAAGGACAAACACGTAGCTGCA
GTTGCATGAATCCGGAAAGCTCTTGCTCATTCCACTCAATTAATTCTTTC
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