CN188396

Overview
NameCN188396
Unique NameCN188396
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11715 contig Csv1_Contig11715:276..1038. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188396 vs. ExPASy Swiss-Prot
Match: LTAA_AERJA (L-allo-threonine aldolase OS=Aeromonas jandaei GN=ltaA PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.160e-26
Identity = 69/156 (44.23%), Postives = 98/156 (62.82%), Query Frame = -3
Query:  294 VRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXXXXXXXXLQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLDAACLLKKLEEHGVLVMPESSTRVRIVVHHQISASDVHYTLSCF 761
            VR LV   DS S+CLSKGLGAPVGS++VGS  FI +ARRLRK +GGGMRQ           LQ++V+ + D DH++A+ LAEGL  L G+R+D+  V+TN+V+ ++T     ++A LL  ++  G+L        +R+V H QI   D+   +  F
Sbjct:  183 VRELVAPFDSVSICLSKGLGAPVGSLLVGSHAFIARARRLRKMVGGGMRQAGILAQAGLFALQQHVVRLAD-DHRRARQLAEGLAALPGIRLDLAQVQTNMVFLQLTSG---ESAPLLAFMKARGILF--SGYGELRLVTHLQIHDDDIEEVIDAF 332          
BLAST of CN188396 vs. ExPASy Swiss-Prot
Match: LTAE_ECO57 (Low specificity L-threonine aldolase OS=Escherichia coli O157:H7 GN=ltaE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.188e-16
Identity = 56/145 (38.62%), Postives = 84/145 (57.93%), Query Frame = -3
Query:  327 VRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXXXXXXXXLQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLDAACLLKKLEEHGVLVMPESSTRVRIVVHHQIS 761
            ++ L Q  DS ++CLSKGLG PVGS++VG++++IK+A R RK  GGGMRQ           L+ NV   L  DH  A  +AE   QL+    DV   +TN+++  + E+   +AA L + ++   VL+   +S  VR+V H  +S
Sbjct:  181 LKELTQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRAIRWRKMTGGGMRQSGILAAAGMYALKNNV-ARLQEDHDNAAWMAE---QLREAGADVMRQDTNMLFVRVGEE---NAAALGEYMKARNVLI--NASPIVRLVTHLDVS 316          
BLAST of CN188396 vs. ExPASy Swiss-Prot
Match: LTAE_ECOLI (Low specificity L-threonine aldolase OS=Escherichia coli (strain K12) GN=ltaE PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.027e-16
Identity = 55/145 (37.93%), Postives = 84/145 (57.93%), Query Frame = -3
Query:  327 VRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXXXXXXXXLQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLDAACLLKKLEEHGVLVMPESSTRVRIVVHHQIS 761
            ++ + Q  DS ++CLSKGLG PVGS++VG++++IK+A R RK  GGGMRQ           L+ NV   L  DH  A  +AE   QL+    DV   +TN+++  + E+   +AA L + ++   VL+   +S  VR+V H  +S
Sbjct:  181 LKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRAIRWRKMTGGGMRQSGILAAAGIYALKNNV-ARLQEDHDNAAWMAE---QLREAGADVMRQDTNMLFVRVGEE---NAAALGEYMKARNVLI--NASPIVRLVTHLDVS 316          
BLAST of CN188396 vs. ExPASy Swiss-Prot
Match: YF64_CAEEL (Uncharacterized protein R102.4 OS=Caenorhabditis elegans GN=R102.4 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.822e-15
Identity = 51/161 (31.68%), Postives = 84/161 (52.17%), Query Frame = -3
Query:  288 VRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXXXXXXXXLQENVLVMLDGDHKKAKLLAEGLNQL--KGLRVDVDAVETNIVYFEITE-DSKLDAACLLKKLEEHGVLVMPESSTRVRIVVHHQISASDVHYTLSCFQK 761
            V ++   AD+  +C SKGLGAPVGS++VG K+FI +AR  RK LGGG RQ           L ++    +  DH++AK LA  +N    +  R  V A E +I    +    + +    L    ++H +L M   + R+R+V++  +S  ++   +  ++K
Sbjct:  249 VSKIASFADTVQMCFSKGLGAPVGSIVVGPKDFIDRARHSRKALGGGWRQSGILAAAAHIAL-DHADATIRADHERAKTLARMINDATPEEFRTKVFAAEKDITNMVLVHCQNGVTVQQLTDFFQKHDILAMTFDARRIRMVLNWNVSDENLETIVEVYKK 408          
BLAST of CN188396 vs. ExPASy Swiss-Prot
Match: GLY1_ASHGO (Threonine aldolase OS=Ashbya gossypii GN=GLY1 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.359e-12
Identity = 54/164 (32.93%), Postives = 85/164 (51.83%), Query Frame = -3
Query:  258 DSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXXXXXXXXLQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLDAACLLKKLEEHGVLVMPESSTRVRIVVHHQISASDV----HYTLSCFQKIYAGVCEENG 737
            DS S+CLSK +GAP+GS++VGS +FIKKA   RK  GGG+RQ           +Q +    +   H+ A  LA    +  G+ ++  A +TN V+ ++ + SK++   L+KK  ++G  +M       R+  H+QIS   +       L  F+       +ENG
Sbjct:  206 DSISICLSKSMGAPMGSILVGSHKFIKKANHFRKQQGGGVRQSGMMCKMAMVAIQGDWKGKMRRSHRMAHELARFCAE-HGIPLESPA-DTNFVFLDL-QKSKMNPDVLVKKSLKYGCKLMGG-----RVSFHYQISEESLEKIKQAILEAFEYSKKNPYDENG 361          
BLAST of CN188396 vs. ExPASy Swiss-Prot
Match: GLY1_SCHPO (Probable threonine aldolase OS=Schizosaccharomyces pombe GN=gly1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.166e-12
Identity = 52/141 (36.88%), Postives = 77/141 (54.61%), Query Frame = -3
Query:  315 DSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXXXXXXXXLQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLDAACLLKKLEEHGVLVMPESSTRVRIVVHHQISASDV 737
            DS S+CLSKGL APVGS+IVG ++FI KA+  RK  GGG+RQ           +Q N   +L   HK A  +AE    L G+ ++V   ++N+V       + ++ A L  + ++ G+++M       RIV H QI+   V
Sbjct:  218 DSVSLCLSKGLAAPVGSIIVGPRDFIAKAKWFRKAYGGGLRQSGMLAAAGLYSIQHN-FPLLKQVHKYAIEVAEYAESL-GIELEV-PTQSNMVTL-----ANINVAILCDEAKKSGIILMGP-----RIVFHIQITPDAV 345          
BLAST of CN188396 vs. ExPASy Swiss-Prot
Match: GLY1_YEAST (Low specificity L-threonine aldolase OS=Saccharomyces cerevisiae GN=GLY1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.963e-11
Identity = 47/137 (34.31%), Postives = 76/137 (55.47%), Query Frame = -3
Query:  327 DSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXXXXXXXXLQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLDAACLLKKLEEHGVLVMPESSTRVRIVVHHQIS 737
            DS S+CLSK +GAP+GSV+VG+ +F+KKA   RK  GGG+RQ           +  +    L   H  A  LAE   + KG+ ++  A +TN V+  + + +++D   L+KK  ++ V +M       R+  H+Q++
Sbjct:  205 DSISICLSKSMGAPIGSVLVGNLKFVKKATHFRKQQGGGIRQSGMMARIALVNINNDWKSQLLYSHSLAHELAE-YCEAKGIPLESPA-DTNFVFINL-KAARMDPDVLVKKGLKYNVKLMGG-----RVSFHYQVT 333          
BLAST of CN188396 vs. ExPASy Swiss-Prot
Match: GLY1_CANAL (Threonine aldolase OS=Candida albicans GN=GLY1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.373e-11
Identity = 49/147 (33.33%), Postives = 76/147 (51.70%), Query Frame = -3
Query:  297 DSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXXXXXXXXLQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLDAACLLKKLEEHGVLVMPESSTRVRIVVHHQISASDVHYTLSC 737
            DS S+CLSK LGAP+GSV+VG ++FI+KA   +K  GGG+RQ           +  N L  L+  H  AK + +   Q  G++++   V+T++V+ ++ + +K+D      +L E G           RI  H Q+S   V     C
Sbjct:  205 DSVSLCLSKSLGAPIGSVLVGDEKFIRKANHFKKQSGGGIRQAGIMSAMAIHAIDYN-LSKLELSHNYAKQIGD-FCQEHGIKLE-SPVDTSLVFLDL-KANKMDP----NRLVELGRTKYNVKLMGQRIACHFQLSQESVDNVKKC 343          
The following BLAST results are available for this feature:
BLAST of CN188396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
LTAA_AERJA2.160e-2644.23L-allo-threonine aldolase OS=Aeromonas jandaei GN=... [more]
LTAE_ECO571.188e-1638.62Low specificity L-threonine aldolase OS=Escherichi... [more]
LTAE_ECOLI2.027e-1637.93Low specificity L-threonine aldolase OS=Escherichi... [more]
YF64_CAEEL3.822e-1531.68Uncharacterized protein R102.4 OS=Caenorhabditis e... [more]
GLY1_ASHGO1.359e-1232.93Threonine aldolase OS=Ashbya gossypii GN=GLY1 PE=3... [more]
GLY1_SCHPO5.166e-1236.88Probable threonine aldolase OS=Schizosaccharomyces... [more]
GLY1_YEAST1.963e-1134.31Low specificity L-threonine aldolase OS=Saccharomy... [more]
GLY1_CANAL4.373e-1133.33Threonine aldolase OS=Candida albicans GN=GLY1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005P14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005P14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188396 ID=CN188396; Name=CN188396; organism=Citrus sinensis; type=EST; length=763bp
CCTTTTGCTTTAGGTTTGCATTCTGGTGAAATTCACAACATATATAAAAG
CCATTTGAAGTGGTTAATTAAATCACTTAACTTGCAACTGATCCTTGGAT
AAATTAAGAAAGTTAACTAAAGCACAACTAAAATTGATTTAAGTTTTTAT
ACAGGAAGCAGTTACTGCCATTCTGCCAAGATGGTTCGTAACAATTCCCT
GCAGCATATGCAAATGTTTTTCAAAGGAGTATAGGATGGCAATTTCTCCT
CCTAGTTTCCATTTTCTTCACATACTCCAGCATAAATTTTCTGAAAGCAT
GACAAAGTGTAATGCACATCGCTTGCTGAAATTTGATGGTGGACCACAAT
TCTAACTCTTGTAGAGCTCTCTGGCATAACAAGTACACCATGCTCTTCCA
ATTTTTTGAGTAGGCATGCCGCGTCCAACTTCGAGTCCTCTGTAATTTCA
AAATATACAATGTTGGTCTCCACTGCATCTACATCCACCCTTAATCCTTT
TAGTTGATTCAATCCTTCTGCCAACAATTTTGCTTTCTTGTGGTCACCAT
CAAGCATTACAAGAACATTCTCTTGTAAAGCAACCAATGCGGCAGCACAA
AGGACACCAACTTGTCTCATACCGCCACCTAAGGTTTTCCTAAGTCTTCG
AGCCTTCTTTATAAATTCTTTGGAACCAACAATAACAGATCCAACAGGAG
CACCAAGACCTTTTGACAGGCATACCGAAGCTGAATCAGCCGCCTGTACA
AGCCTGCGAACAG
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